##taxon type name_official name_compact name_NCBI name_imported nr_of_loci ## ## ## ## 329726 core species Acaryochloris marina MBIC11017 Acaryochloris marina Acaryochloris marina MBIC11017 Acaryochloris marina MBIC11017 8383 634452 core species Acetobacter pasteurianus IFO 3283 01 Acetobacter pasteurianus Acetobacter pasteurianus IFO 3283-01 Acetobacter pasteurianus IFO 3283 01 3050 441768 core species Acholeplasma laidlawii PG 8A Acholeplasma laidlawii Acholeplasma laidlawii PG-8A Acholeplasma laidlawii PG 8A 1380 525909 peripheral species Acidimicrobium ferrooxidans DSM 10331 Acidimicrobium ferrooxidans Acidimicrobium ferrooxidans DSM 10331 Acidimicrobium ferrooxidans DSM 10331 1964 349163 core species Acidiphilium cryptum JF-5 Acidiphilium cryptum Acidiphilium cryptum JF-5 Acidiphilium cryptum JF-5 3559 243159 peripheral species Acidithiobacillus ferrooxidans ATCC 23270 Acidithiobacillus ferrooxidans 23270 Acidithiobacillus ferrooxidans ATCC 23270 Acidithiobacillus ferrooxidans ATCC 23270 3147 380394 core species Acidithiobacillus ferrooxidans ATCC 53993 Acidithiobacillus ferrooxidans 53993 Acidithiobacillus ferrooxidans ATCC 53993 Acidithiobacillus ferrooxidans ATCC 53993 2826 240015 core species Acidobacterium capsulatum ATCC 51196 Acidobacterium capsulatum Acidobacterium capsulatum ATCC 51196 Acidobacterium capsulatum ATCC 51196 3377 351607 core species Acidothermus cellulolyticus 11B Acidothermus cellulolyticus Acidothermus cellulolyticus 11B Acidothermus cellulolyticus 11B 2157 397945 peripheral species Acidovorax avenae citrulli AAC00-1 Acidovorax citrulli Acidovorax citrulli AAC00-1 Acidovorax avenae citrulli AAC00-1 4709 232721 core species Acidovorax JS42 Acidovorax sp. JS42 Acidovorax sp. JS42 Acidovorax JS42 4155 480119 peripheral species Acinetobacter baumannii AB0057 Acinetobacter baumannii AB0057 Acinetobacter baumannii AB0057 Acinetobacter baumannii AB0057 3801 557600 peripheral species Acinetobacter baumannii AB307 0294 Acinetobacter baumannii AB307 Acinetobacter baumannii AB307-0294 Acinetobacter baumannii AB307 0294 3451 405416 peripheral species Acinetobacter baumannii ACICU Acinetobacter baumannii ACICU Acinetobacter baumannii ACICU Acinetobacter baumannii ACICU 3759 400667 peripheral species Acinetobacter baumannii ATCC 17978 Acinetobacter baumannii 17978 Acinetobacter baumannii ATCC 17978 Acinetobacter baumannii ATCC 17978 3367 509173 peripheral species Acinetobacter baumannii AYE Acinetobacter baumannii AYE Acinetobacter baumannii AYE Acinetobacter baumannii AYE 3712 509170 peripheral species Acinetobacter baumannii SDF Acinetobacter baumannii SDF Acinetobacter baumannii SDF Acinetobacter baumannii SDF 2975 62977 core species Acinetobacter sp ADP1 Acinetobacter sp. ADP1 Acinetobacter sp. ADP1 Acinetobacter sp ADP1 3307 416269 core species Actinobacillus pleuropneumoniae L20 Actinobacillus pleuropneumoniae L20 Actinobacillus pleuropneumoniae L20 Actinobacillus pleuropneumoniae L20 2012 434271 peripheral species Actinobacillus pleuropneumoniae serovar 3 JL03 Actinobacillus pleuropneumoniae JL03 Actinobacillus pleuropneumoniae serovar 3 str. JL03 Actinobacillus pleuropneumoniae serovar 3 JL03 2036 537457 peripheral species Actinobacillus pleuropneumoniae serovar 7 AP76 Actinobacillus pleuropneumoniae AP76 Actinobacillus pleuropneumoniae serovar 7 str. AP76 Actinobacillus pleuropneumoniae serovar 7 AP76 2142 339671 peripheral species Actinobacillus succinogenes 130Z Actinobacillus succinogenes Actinobacillus succinogenes 130Z Actinobacillus succinogenes 130Z 2079 446462 core species Actinosynnema mirum DSM 43827 Actinosynnema mirum Actinosynnema mirum DSM 43827 Actinosynnema mirum DSM 43827 6916 7159 peripheral species Aedes aegypti Aedes aegypti Aedes aegypti Aedes aegypti 15419 380703 core species Aeromonas hydrophila ATCC 7966 Aeromonas hydrophila Aeromonas hydrophila subsp. hydrophila ATCC 7966 Aeromonas hydrophila ATCC 7966 4121 382245 peripheral species Aeromonas salmonicida A449 Aeromonas salmonicida Aeromonas salmonicida subsp. salmonicida A449 Aeromonas salmonicida A449 4436 272557 core species Aeropyrum pernix Aeropyrum pernix Aeropyrum pernix K1 Aeropyrum pernix 1700 668336 peripheral species Aggregatibacter actinomycetemcomitans D11S 1 Aggregatibacter actinomycetemcomitans Aggregatibacter actinomycetemcomitans D11S-1 Aggregatibacter actinomycetemcomitans D11S 1 2134 634176 core species Aggregatibacter aphrophilus NJ8700 Aggregatibacter aphrophilus Aggregatibacter aphrophilus NJ8700 Aggregatibacter aphrophilus NJ8700 2219 311403 peripheral species Agrobacterium radiobacter K84 Agrobacterium radiobacter Agrobacterium radiobacter K84 Agrobacterium radiobacter K84 6684 176299 core species Agrobacterium tumefaciens C58 Cereon Agrobacterium tumefaciens Agrobacterium tumefaciens str. C58 Agrobacterium tumefaciens C58 Cereon 5355 311402 peripheral species Agrobacterium vitis S4 Agrobacterium vitis Agrobacterium vitis S4 Agrobacterium vitis S4 5389 349741 core species Akkermansia muciniphila ATCC BAA 835 Akkermansia muciniphila Akkermansia muciniphila ATCC BAA-835 Akkermansia muciniphila ATCC BAA 835 2138 393595 core species Alcanivorax borkumensis SK2 Alcanivorax borkumensis Alcanivorax borkumensis SK2 Alcanivorax borkumensis SK2 2755 521098 core species Alicyclobacillus acidocaldarius DSM 446 Alicyclobacillus acidocaldarius Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Alicyclobacillus acidocaldarius DSM 446 3084 316275 core species Aliivibrio salmonicida LFI1238 Aliivibrio salmonicida Aliivibrio salmonicida LFI1238 Aliivibrio salmonicida LFI1238 3911 187272 core species Alkalilimnicola ehrlichei MLHE-1 Alkalilimnicola ehrlichii Alkalilimnicola ehrlichii MLHE-1 Alkalilimnicola ehrlichei MLHE-1 2865 293826 core species Alkaliphilus metalliredigens QYMF Alkaliphilus metalliredigens Alkaliphilus metalliredigens QYMF Alkaliphilus metalliredigens QYMF 4625 350688 peripheral species Alkaliphilus oremlandii OhILAs Alkaliphilus oremlandii Alkaliphilus oremlandii OhILAs Alkaliphilus oremlandii OhILAs 2836 314275 core species Alteromonas macleodii Deep ecotype Alteromonas macleodii Alteromonas macleodii 'Deep ecotype' Alteromonas macleodii Deep ecotype 4072 429009 core species Ammonifex degensii KC4 Ammonifex degensii Ammonifex degensii KC4 Ammonifex degensii KC4 2080 240292 core species Anabaena variabilis ATCC 29413 Anabaena variabilis Anabaena variabilis ATCC 29413 Anabaena variabilis ATCC 29413 5661 521460 core species Anaerocellum thermophilum DSM 6725 Anaerocellum thermophilum Anaerocellum thermophilum DSM 6725 Anaerocellum thermophilum DSM 6725 2666 525919 core species Anaerococcus prevotii DSM 20548 Anaerococcus prevotii Anaerococcus prevotii DSM 20548 Anaerococcus prevotii DSM 20548 1806 455488 peripheral species Anaeromyxobacter dehalogenans 2CP 1 Anaeromyxobacter dehalogenans 2CP1 Anaeromyxobacter dehalogenans 2CP-1 Anaeromyxobacter dehalogenans 2CP 1 4473 290397 core species Anaeromyxobacter dehalogenans 2CP-C Anaeromyxobacter dehalogenans 2CPC Anaeromyxobacter dehalogenans 2CP-C Anaeromyxobacter dehalogenans 2CP-C 4346 404589 peripheral species Anaeromyxobacter Fw109-5 Anaeromyxobacter sp. Fw1095 Anaeromyxobacter sp. Fw109-5 Anaeromyxobacter Fw109-5 4466 447217 peripheral species Anaeromyxobacter K Anaeromyxobacter sp. K Anaeromyxobacter sp. K Anaeromyxobacter K 4457 574556 peripheral species Anaplasma centrale Israel Anaplasma centrale Anaplasma centrale str. Israel Anaplasma centrale Israel 923 320483 peripheral species Anaplasma marginale Florida Anaplasma marginale Florida Anaplasma marginale str. Florida Anaplasma marginale Florida 940 234826 core species Anaplasma marginale St Maries Anaplasma marginale Maries Anaplasma marginale str. St. Maries Anaplasma marginale St Maries 948 212042 peripheral species Anaplasma phagocytophilum HZ Anaplasma phagocytophilum Anaplasma phagocytophilum HZ Anaplasma phagocytophilum HZ 1264 28377 peripheral species Anolis carolinensis Anolis carolinensis Anolis carolinensis Anolis carolinensis 17588 7165 peripheral species Anopheles gambiae Anopheles gambiae Anopheles gambiae Anopheles gambiae 12457 491915 core species Anoxybacillus flavithermus WK1 Anoxybacillus flavithermus Anoxybacillus flavithermus WK1 Anoxybacillus flavithermus WK1 2831 224324 core species Aquifex aeolicus Aquifex aeolicus Aquifex aeolicus VF5 Aquifex aeolicus 1560 59689 peripheral species Arabidopsis lyrata Arabidopsis lyrata Arabidopsis lyrata Arabidopsis lyrata 32667 3702 core species Arabidopsis thaliana Arabidopsis thaliana Arabidopsis thaliana Arabidopsis thaliana 31280 224325 core species Archaeoglobus fulgidus Archaeoglobus fulgidus Archaeoglobus fulgidus DSM 4304 Archaeoglobus fulgidus 2418 367737 core species Arcobacter butzleri RM4018 Arcobacter butzleri Arcobacter butzleri RM4018 Arcobacter butzleri RM4018 2259 76114 core species Aromatoleum aromaticum EbN1 Aromatoleum aromaticum Aromatoleum aromaticum EbN1 Aromatoleum aromaticum EbN1 4575 290340 core species Arthrobacter aurescens TC1 Arthrobacter aurescens Arthrobacter aurescens TC1 Arthrobacter aurescens TC1 4587 452863 peripheral species Arthrobacter chlorophenolicus A6 Arthrobacter chlorophenolicus Arthrobacter chlorophenolicus A6 Arthrobacter chlorophenolicus A6 4590 290399 peripheral species Arthrobacter FB24 Arthrobacter sp. FB24 Arthrobacter sp. FB24 Arthrobacter FB24 4506 5057 peripheral species Aspergillus clavatus Aspergillus clavatus Aspergillus clavatus Aspergillus clavatus 9121 5059 peripheral species Aspergillus flavus Aspergillus flavus Aspergillus flavus Aspergillus flavus 13487 5085 core species Aspergillus fumigatus Aspergillus fumigatus Aspergillus fumigatus Aspergillus fumigatus 9630 162425 peripheral species Aspergillus nidulans Emericella nidulans Emericella nidulans Aspergillus nidulans 10534 5061 peripheral species Aspergillus niger Aspergillus niger Aspergillus niger Aspergillus niger 14086 5062 peripheral species Aspergillus oryzae Aspergillus oryzae Aspergillus oryzae Aspergillus oryzae 12062 33178 peripheral species Aspergillus terreus Aspergillus terreus Aspergillus terreus Aspergillus terreus 10402 322098 peripheral species Aster yellows witches-broom phytoplasma AYWB Phytoplasma asteris Aster yellows witches'-broom phytoplasma AYWB Aster yellows witches-broom phytoplasma AYWB 693 521095 core species Atopobium parvulum DSM 20469 Atopobium parvulum Atopobium parvulum DSM 20469 Atopobium parvulum DSM 20469 1353 62928 peripheral species Azoarcus BH72 Azoarcus sp. BH72 Azoarcus sp. BH72 Azoarcus BH72 3989 438753 core species Azorhizobium caulinodans ORS 571 Azorhizobium caulinodans Azorhizobium caulinodans ORS 571 Azorhizobium caulinodans ORS 571 4717 322710 core species Azotobacter vinelandii DJ Azotobacter vinelandii Azotobacter vinelandii DJ Azotobacter vinelandii DJ 5050 326423 peripheral species Bacillus amyloliquefaciens FZB42 Bacillus amyloliquefaciens Bacillus amyloliquefaciens FZB42 Bacillus amyloliquefaciens FZB42 3693 592021 peripheral species Bacillus anthracis A0248 Bacillus anthracis A0248 Bacillus anthracis str. A0248 Bacillus anthracis A0248 5291 198094 peripheral species Bacillus anthracis Ames Bacillus anthracis Ames Bacillus anthracis str. Ames Bacillus anthracis Ames 5328 261594 peripheral species Bacillus anthracis Ames 0581 Bacillus anthracis AmesA Bacillus anthracis str. 'Ames Ancestor' Bacillus anthracis Ames 0581 5583 568206 peripheral species Bacillus anthracis CDC 684 Bacillus anthracis 684 Bacillus anthracis str. CDC 684 Bacillus anthracis CDC 684 5902 260799 peripheral species Bacillus anthracis str Sterne Bacillus anthracis Sterne Bacillus anthracis str. Sterne Bacillus anthracis str Sterne 5287 572264 peripheral species Bacillus cereus 03BB102 Bacillus cereus 03BB102 Bacillus cereus 03BB102 Bacillus cereus 03BB102 5606 405534 peripheral species Bacillus cereus AH187 Bacillus cereus AH187 Bacillus cereus AH187 Bacillus cereus AH187 5783 405535 peripheral species Bacillus cereus AH820 Bacillus cereus AH820 Bacillus cereus AH820 Bacillus cereus AH820 5810 222523 peripheral species Bacillus cereus ATCC 10987 Bacillus cereus 10987 Bacillus cereus ATCC 10987 Bacillus cereus ATCC 10987 5843 226900 peripheral species Bacillus cereus ATCC14579 Bacillus cereus 14579 Bacillus cereus ATCC 14579 Bacillus cereus ATCC14579 5255 405532 peripheral species Bacillus cereus B4264 Bacillus cereus B4264 Bacillus cereus B4264 Bacillus cereus B4264 5398 315749 peripheral species Bacillus cereus cytotoxis NVH 391-98 Bacillus cereus 39198 Bacillus cytotoxicus NVH 391-98 Bacillus cereus cytotoxis NVH 391-98 3844 405531 peripheral species Bacillus cereus G9842 Bacillus cereus G9842 Bacillus cereus G9842 Bacillus cereus G9842 5857 361100 peripheral species Bacillus cereus Q1 Bacillus cereus Q1 Bacillus cereus Q1 Bacillus cereus Q1 5488 288681 peripheral species Bacillus cereus ZK Bacillus cereus E33L Bacillus cereus E33L Bacillus cereus ZK 5641 66692 peripheral species Bacillus clausii KSM-K16 Bacillus clausii Bacillus clausii KSM-K16 Bacillus clausii KSM-K16 4096 272558 peripheral species Bacillus halodurans Bacillus halodurans Bacillus halodurans C-125 Bacillus halodurans 4065 279010 peripheral species Bacillus licheniformis ATCC 14580 Bacillus licheniformis 14580 Bacillus licheniformis ATCC 14580 Bacillus licheniformis ATCC 14580 4173 315750 peripheral species Bacillus pumilus SAFR-032 Bacillus pumilus Bacillus pumilus SAFR-032 Bacillus pumilus SAFR-032 3678 224308 core species Bacillus subtilis Bacillus subtilis Bacillus subtilis subsp. subtilis str. 168 Bacillus subtilis 4176 412694 peripheral species Bacillus thuringiensis Al Hakam Bacillus thuringiensis Hakam Bacillus thuringiensis str. Al Hakam Bacillus thuringiensis Al Hakam 4798 281309 peripheral species Bacillus thuringiensis konkukian Bacillus thuringiensis Konkukian Bacillus thuringiensis serovar konkukian str. 97-27 Bacillus thuringiensis konkukian 5197 315730 peripheral species Bacillus weihenstephanensis KBAB4 Bacillus weihenstephanensis Bacillus weihenstephanensis KBAB4 Bacillus weihenstephanensis KBAB4 5653 272559 peripheral species Bacteroides fragilis NCTC 9434 Bacteroides fragilis 9343 Bacteroides fragilis NCTC 9343 Bacteroides fragilis NCTC 9434 4226 295405 peripheral species Bacteroides fragilis YCH46 Bacteroides fragilis YCH46 Bacteroides fragilis YCH46 Bacteroides fragilis YCH46 4625 226186 core species Bacteroides thetaiotaomicron VPI-5482 Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 Bacteroides thetaiotaomicron VPI-5482 4816 435590 peripheral species Bacteroides vulgatus ATCC 8482 Bacteroides vulgatus ATCC 8482 Bacteroides vulgatus ATCC 8482 Bacteroides vulgatus ATCC 8482 4065 360095 peripheral species Bartonella bacilliformis KC583 Bartonella bacilliformis KC583 Bartonella bacilliformis KC583 Bartonella bacilliformis KC583 1283 634504 peripheral species Bartonella grahamii as4aup Bartonella grahamii as4aup Bartonella grahamii as4aup Bartonella grahamii as4aup 1768 283166 core species Bartonella henselae Houston-1 Bartonella henselae Bartonella henselae str. Houston-1 Bartonella henselae Houston-1 1488 283165 peripheral species Bartonella quintana Toulouse Bartonella quintana Bartonella quintana str. Toulouse Bartonella quintana Toulouse 1142 382640 peripheral species Bartonella tribocorum CIP 105476 Bartonella tribocorum Bartonella tribocorum CIP 105476 Bartonella tribocorum CIP 105476 2087 374463 core species Baumannia cicadellinicola Homalodisca coagulata Baumannia cicadellinicola Baumannia cicadellinicola str. Hc (Homalodisca coagulata) Baumannia cicadellinicola Homalodisca coagulata 595 264462 core species Bdellovibrio bacteriovorus Bdellovibrio bacteriovorus Bdellovibrio bacteriovorus HD100 Bdellovibrio bacteriovorus 3587 395963 core species Beijerinckia indica ATCC 9039 Beijerinckia indica Beijerinckia indica subsp. indica ATCC 9039 Beijerinckia indica ATCC 9039 3784 471853 core species Beutenbergia cavernae DSM 12333 Beutenbergia cavernae Beutenbergia cavernae DSM 12333 Beutenbergia cavernae DSM 12333 4197 367928 peripheral species Bifidobacterium adolescentis ATCC 15703 Bifidobacterium adolescentis Bifidobacterium adolescentis ATCC 15703 Bifidobacterium adolescentis ATCC 15703 1631 442563 peripheral species Bifidobacterium animalis lactis AD011 Bifidobacterium animalis AD011 Bifidobacterium animalis subsp. lactis AD011 Bifidobacterium animalis lactis AD011 1527 580050 peripheral species Bifidobacterium animalis lactis Bl 04 Bifidobacterium animalis Bl04 Bifidobacterium animalis subsp. lactis Bl-04 Bifidobacterium animalis lactis Bl 04 1567 555970 peripheral species Bifidobacterium animalis lactis DSM 10140 Bifidobacterium animalis 10140 Bifidobacterium animalis subsp. lactis DSM 10140 Bifidobacterium animalis lactis DSM 10140 1566 401473 peripheral species Bifidobacterium dentium Bd1 Bifidobacterium dentium Bifidobacterium dentium Bd1 Bifidobacterium dentium Bd1 2129 206672 core species Bifidobacterium longum Bifidobacterium longum NCC2705 Bifidobacterium longum NCC2705 Bifidobacterium longum 1729 205913 peripheral species Bifidobacterium longum DJO10A Bifidobacterium longum DJO10A Bifidobacterium longum DJO10A Bifidobacterium longum DJO10A 2002 391904 peripheral species Bifidobacterium longum infantis ATCC 15697 Bifidobacterium longum 15697 Bifidobacterium longum subsp. infantis ATCC 15697 Bifidobacterium longum infantis ATCC 15697 2416 331104 peripheral species Blattabacterium Blattella germanica Bge Blattabacterium sp. Bge Blattabacterium sp. (Blattella germanica) str. Bge Blattabacterium Blattella germanica Bge 586 600809 core species Blattabacterium Periplaneta americana BPLAN Blattabacterium sp. BPLAN Blattabacterium sp. (Periplaneta americana) str. BPLAN Blattabacterium Periplaneta americana BPLAN 580 360910 peripheral species Bordetella avium 197N Bordetella avium Bordetella avium 197N Bordetella avium 197N 3209 257310 core species Bordetella bronchiseptica Bordetella bronchiseptica Bordetella bronchiseptica RB50 Bordetella bronchiseptica 4994 257311 peripheral species Bordetella parapertussis Bordetella parapertussis Bordetella parapertussis 12822 Bordetella parapertussis 4180 257313 peripheral species Bordetella pertussis Bordetella pertussis Bordetella pertussis Tohama I Bordetella pertussis 3436 340100 peripheral species Bordetella petrii Bordetella petrii Bordetella petrii DSM 12804 Bordetella petrii 5027 390236 peripheral species Borrelia afzelii PKo Borrelia afzelii Borrelia afzelii PKo Borrelia afzelii PKo 1209 224326 core species Borrelia burgdorferi Borrelia burgdorferi B31 Borrelia burgdorferi B31 Borrelia burgdorferi 1640 445985 peripheral species Borrelia burgdorferi ZS7 Borrelia burgdorferi ZS7 Borrelia burgdorferi ZS7 Borrelia burgdorferi ZS7 1239 412419 peripheral species Borrelia duttonii Ly Borrelia duttonii Borrelia duttonii Ly Borrelia duttonii Ly 1302 290434 peripheral species Borrelia garinii PBi Borrelia garinii Borrelia garinii PBi Borrelia garinii PBi 1253 314723 peripheral species Borrelia hermsii DAH Borrelia hermsii Borrelia hermsii DAH Borrelia hermsii DAH 819 412418 peripheral species Borrelia recurrentis A1 Borrelia recurrentis Borrelia recurrentis A1 Borrelia recurrentis A1 990 314724 peripheral species Borrelia turicatae 91E135 Borrelia turicatae Borrelia turicatae 91E135 Borrelia turicatae 91E135 818 9913 peripheral species Bos taurus Bos taurus Bos taurus Bos taurus 21048 332648 peripheral species Botryotinia fuckeliana B05.10 Botryotinia fuckeliana Botryotinia fuckeliana B05.10 Botryotinia fuckeliana B05.10 16365 446465 core species Brachybacterium faecium DSM 4810 Brachybacterium faecium Brachybacterium faecium DSM 4810 Brachybacterium faecium DSM 4810 3068 15368 peripheral species Brachypodium distachyon Brachypodium distachyon Brachypodium distachyon Brachypodium distachyon 25532 565034 core species Brachyspira hyodysenteriae WA1 Brachyspira hyodysenteriae Brachyspira hyodysenteriae WA1 Brachyspira hyodysenteriae WA1 2642 288000 peripheral species Bradyrhizobium BTAi1 Bradyrhizobium sp. BTAi1 Bradyrhizobium sp. BTAi1 Bradyrhizobium BTAi1 7621 224911 core species Bradyrhizobium japonicum Bradyrhizobium japonicum Bradyrhizobium japonicum USDA 110 Bradyrhizobium japonicum 8317 114615 peripheral species Bradyrhizobium ORS278 Bradyrhizobium sp. ORS278 Bradyrhizobium sp. ORS278 Bradyrhizobium ORS278 6717 7739 core species Branchiostoma floridae Branchiostoma floridae Branchiostoma floridae Branchiostoma floridae 50817 358681 core species Brevibacillus brevis NBRC 100599 Brevibacillus brevis 100599 Brevibacillus brevis NBRC 100599 Brevibacillus brevis NBRC 100599 5947 262698 peripheral species Brucella abortus bv 1 9 941 Brucella abortus 9941 Brucella abortus bv. 1 str. 9-941 Brucella abortus bv 1 9 941 3081 430066 peripheral species Brucella abortus S19 Brucella abortus S19 Brucella abortus S19 Brucella abortus S19 3000 483179 peripheral species Brucella canis ATCC 23365 Brucella canis 23365 Brucella canis ATCC 23365 Brucella canis ATCC 23365 3251 224914 core species Brucella melitensis Brucella melitensis 16M Brucella melitensis bv. 1 str. 16M Brucella melitensis 3198 546272 peripheral species Brucella melitensis ATCC 23457 Brucella melitensis 23457 Brucella melitensis ATCC 23457 Brucella melitensis ATCC 23457 3136 359391 peripheral species Brucella melitensis biovar Abortus Brucella melitensis 2308 Brucella melitensis biovar Abortus 2308 Brucella melitensis biovar Abortus 3034 568815 peripheral species Brucella microti CCM 4915 Brucella microti Brucella microti CCM 4915 Brucella microti CCM 4915 3282 444178 peripheral species Brucella ovis Brucella ovis Brucella ovis ATCC 25840 Brucella ovis 2890 204722 peripheral species Brucella suis 1330 Brucella suis 1330 Brucella suis 1330 Brucella suis 1330 3271 470137 peripheral species Brucella suis ATCC 23445 Brucella suis 23445 Brucella suis ATCC 23445 Brucella suis ATCC 23445 3241 224915 peripheral species Buchnera aphidicola Buchnera aphidicola Bp Buchnera aphidicola str. Bp (Baizongia pistaciae) Buchnera aphidicola 507 563178 peripheral species Buchnera aphidicola 5A Acyrthosiphon pisum Buchnera aphidicola Ap5A Buchnera aphidicola str. 5A (Acyrthosiphon pisum) Buchnera aphidicola 5A Acyrthosiphon pisum 555 372461 peripheral species Buchnera aphidicola Cc Cinara cedri Buchnera aphidicola Cc Buchnera aphidicola str. Cc (Cinara cedri) Buchnera aphidicola Cc Cinara cedri 362 198804 peripheral species Buchnera aphidicola Sg Buchnera aphidicola Sg Buchnera aphidicola str. Sg (Schizaphis graminum) Buchnera aphidicola Sg 546 561501 peripheral species Buchnera aphidicola Tuc7 Acyrthosiphon pisum Buchnera aphidicola ApTuc7 Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum) Buchnera aphidicola Tuc7 Acyrthosiphon pisum 553 107806 core species Buchnera sp Buchnera aphidicola ApAPS Buchnera aphidicola str. APS (Acyrthosiphon pisum) Buchnera sp 574 269483 peripheral species Burkholderia 383 Burkholderia sp. 383 Burkholderia sp. 383 Burkholderia 383 7717 398577 peripheral species Burkholderia ambifaria MC40 6 Burkholderia ambifaria MC40 Burkholderia ambifaria MC40-6 Burkholderia ambifaria MC40 6 6697 331271 peripheral species Burkholderia cenocepacia AU 1054 Burkholderia cenocepacia 1054 Burkholderia cenocepacia AU 1054 Burkholderia cenocepacia AU 1054 6477 331272 peripheral species Burkholderia cenocepacia HI2424 Burkholderia cenocepacia 2424 Burkholderia cenocepacia HI2424 Burkholderia cenocepacia HI2424 6919 216591 peripheral species Burkholderia cenocepacia J2315 Burkholderia cenocepacia J2315 Burkholderia cenocepacia J2315 Burkholderia cenocepacia J2315 7115 406425 peripheral species Burkholderia cenocepacia MC0 3 Burkholderia cenocepacia MC03 Burkholderia cenocepacia MC0-3 Burkholderia cenocepacia MC0 3 7008 339670 peripheral species Burkholderia cepacia AMMD Burkholderia ambifaria AMMD Burkholderia ambifaria AMMD Burkholderia cepacia AMMD 6610 626418 peripheral species Burkholderia glumae BGR1 Burkholderia glumae Burkholderia glumae BGR1 Burkholderia glumae BGR1 5773 243160 peripheral species Burkholderia mallei ATCC 23344 Burkholderia mallei 3344 Burkholderia mallei ATCC 23344 Burkholderia mallei ATCC 23344 5024 412022 peripheral species Burkholderia mallei NCTC 10229 Burkholderia mallei 10229 Burkholderia mallei NCTC 10229 Burkholderia mallei NCTC 10229 5509 320389 peripheral species Burkholderia mallei NCTC 10247 Burkholderia mallei 10247 Burkholderia mallei NCTC 10247 Burkholderia mallei NCTC 10247 5415 320388 peripheral species Burkholderia mallei SAVP1 Burkholderia mallei SAVP1 Burkholderia mallei SAVP1 Burkholderia mallei SAVP1 5188 395019 peripheral species Burkholderia multivorans ATCC 17616 JGI Burkholderia multivorans 17616 Burkholderia multivorans ATCC 17616 Burkholderia multivorans ATCC 17616 JGI 6258 391038 peripheral species Burkholderia phymatum STM815 Burkholderia phymatum STM815 Burkholderia phymatum STM815 Burkholderia phymatum STM815 7496 398527 peripheral species Burkholderia phytofirmans PsJN Burkholderia phytofirmans PsJN Burkholderia phytofirmans PsJN Burkholderia phytofirmans PsJN 7241 357348 peripheral species Burkholderia pseudomallei 1106a Burkholderia pseudomallei 1106a Burkholderia pseudomallei 1106a Burkholderia pseudomallei 1106a 7174 320372 peripheral species Burkholderia pseudomallei 1710b Burkholderia pseudomallei 1710b Burkholderia pseudomallei 1710b Burkholderia pseudomallei 1710b 6347 320373 peripheral species Burkholderia pseudomallei 668 Burkholderia pseudomallei 668 Burkholderia pseudomallei 668 Burkholderia pseudomallei 668 7230 272560 core species Burkholderia pseudomallei K96243 Burkholderia pseudomallei K96243 Burkholderia pseudomallei K96243 Burkholderia pseudomallei K96243 5726 536230 peripheral species Burkholderia pseudomallei MSHR346 Burkholderia pseudomallei MSHR346 Burkholderia pseudomallei MSHR346 Burkholderia pseudomallei MSHR346 4202 271848 peripheral species Burkholderia thailandensis E264 Burkholderia thailandensis Burkholderia thailandensis E264 Burkholderia thailandensis E264 5634 269482 peripheral species Burkholderia vietnamiensis G4 Burkholderia vietnamiensis Burkholderia vietnamiensis G4 Burkholderia vietnamiensis G4 7617 266265 peripheral species Burkholderia xenovorans LB400 Burkholderia xenovorans Burkholderia xenovorans LB400 Burkholderia xenovorans LB400 8702 135651 peripheral species Caenorhabditis brenneri Caenorhabditis brenneri Caenorhabditis brenneri Caenorhabditis brenneri 26076 6238 peripheral species Caenorhabditis briggsae Caenorhabditis briggsae Caenorhabditis briggsae Caenorhabditis briggsae 21978 6239 core species Caenorhabditis elegans Caenorhabditis elegans Caenorhabditis elegans Caenorhabditis elegans 20158 281687 peripheral species Caenorhabditis japonica Caenorhabditis japonica Caenorhabditis japonica Caenorhabditis japonica 25870 31234 peripheral species Caenorhabditis remanei Caenorhabditis remanei Caenorhabditis remanei Caenorhabditis remanei 31518 351627 core species Caldicellulosiruptor saccharolyticus DSM 8903 Caldicellulosiruptor saccharolyticus Caldicellulosiruptor saccharolyticus DSM 8903 Caldicellulosiruptor saccharolyticus DSM 8903 2679 397948 core species Caldivirga maquilingensis IC-167 Caldivirga maquilingensis Caldivirga maquilingensis IC-167 Caldivirga maquilingensis IC-167 1963 360104 peripheral species Campylobacter concisus 13826 Campylobacter concisus Campylobacter concisus 13826 Campylobacter concisus 13826 1985 360105 peripheral species Campylobacter curvus 525 92 Campylobacter curvus Campylobacter curvus 525.92 Campylobacter curvus 525 92 1931 360106 peripheral species Campylobacter fetus 82-40 Campylobacter fetus Campylobacter fetus subsp. fetus 82-40 Campylobacter fetus 82-40 1719 360107 peripheral species Campylobacter hominis ATCC BAA-381 Campylobacter hominis Campylobacter hominis ATCC BAA-381 Campylobacter hominis ATCC BAA-381 1687 192222 core species Campylobacter jejuni Campylobacter jejuni 11168 Campylobacter jejuni subsp. jejuni NCTC 11168 Campylobacter jejuni 1622 354242 peripheral species Campylobacter jejuni 81-176 Campylobacter jejuni 81176 Campylobacter jejuni subsp. jejuni 81-176 Campylobacter jejuni 81-176 1758 407148 peripheral species Campylobacter jejuni 81116 Campylobacter jejuni 81116 Campylobacter jejuni subsp. jejuni 81116 Campylobacter jejuni 81116 1626 360109 peripheral species Campylobacter jejuni doylei 269 97 Campylobacter jejuni 26997 Campylobacter jejuni subsp. doylei 269.97 Campylobacter jejuni doylei 269 97 1731 195099 peripheral species Campylobacter jejuni RM1221 Campylobacter jejuni RM1221 Campylobacter jejuni RM1221 Campylobacter jejuni RM1221 1838 306263 peripheral species Campylobacter lari RM2100 Campylobacter lari RM2100 Campylobacter lari RM2100 Campylobacter lari RM2100 1544 5476 core species Candida albicans Candida albicans Candida albicans Candida albicans 6197 573826 peripheral species Candida dubliniensis CD36 Candida dubliniensis Candida dubliniensis CD36 Candida dubliniensis CD36 5858 522306 core species Candidatus Accumulibacter phosphatis clade IIA UW 1 Accumulibacter phosphatis Candidatus Accumulibacter phosphatis clade IIA str. UW-1 Candidatus Accumulibacter phosphatis clade IIA UW 1 4562 452471 core species Candidatus Amoebophilus asiaticus 5a2 Amoebophilus asiaticus Candidatus Amoebophilus asiaticus 5a2 Candidatus Amoebophilus asiaticus 5a2 1283 511995 core species Candidatus Azobacteroides pseudotrichonymphae genomovar CFP2 Azobacteroides pseudotrichonymphae Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 Candidatus Azobacteroides pseudotrichonymphae genomovar CFP2 852 203907 core species Candidatus Blochmannia floridanus Blochmannia floridanus Candidatus Blochmannia floridanus Candidatus Blochmannia floridanus 583 291272 peripheral species Candidatus Blochmannia pennsylvanicus BPEN Blochmannia pennsylvanicus Candidatus Blochmannia pennsylvanicus str. BPEN Candidatus Blochmannia pennsylvanicus BPEN 610 387662 core species Candidatus Carsonella ruddii PV Carsonella ruddii Candidatus Carsonella ruddii PV Candidatus Carsonella ruddii PV 182 96561 core species Candidatus Desulfococcus oleovorans Hxd3 Desulfococcus oleovorans Desulfococcus oleovorans Hxd3 Candidatus Desulfococcus oleovorans Hxd3 3265 477974 core species Candidatus Desulforudis audaxviator MP104C Desulforudis audaxviator Candidatus Desulforudis audaxviator MP104C Candidatus Desulforudis audaxviator MP104C 2157 572265 core species Candidatus Hamiltonella defensa 5AT Acyrthosiphon pisum Hamiltonella defensa Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Candidatus Hamiltonella defensa 5AT Acyrthosiphon pisum 2148 573234 core species Candidatus Hodgkinia cicadicola Dsem Hodgkinia cicadicola Candidatus Hodgkinia cicadicola Dsem Candidatus Hodgkinia cicadicola Dsem 169 374847 core species Candidatus Korarchaeum cryptofilum OPF8 Korarchaeum cryptofilum Candidatus Korarchaeum cryptofilum OPF8 Candidatus Korarchaeum cryptofilum OPF8 1602 204669 core species Candidatus Koribacter versatilis Ellin345 Koribacter versatilis Candidatus Koribacter versatilis Ellin345 Candidatus Koribacter versatilis Ellin345 4777 537021 core species Candidatus Liberibacter asiaticus psy62 Liberibacter asiaticus Candidatus Liberibacter asiaticus str. psy62 Candidatus Liberibacter asiaticus psy62 1109 456442 peripheral species Candidatus Methanoregula boonei 6A8 Methanoregula boonei Candidatus Methanoregula boonei 6A8 Candidatus Methanoregula boonei 6A8 2450 521011 core species Candidatus Methanosphaerula palustris E1 9c Methanosphaerula palustris Methanosphaerula palustris E1-9c Candidatus Methanosphaerula palustris E1 9c 2655 335992 core species Candidatus Pelagibacter ubique HTCC1062 Pelagibacter ubique Candidatus Pelagibacter ubique HTCC1062 Candidatus Pelagibacter ubique HTCC1062 1354 59748 peripheral species Candidatus Phytoplasma australiense Phytoplasma australiense Candidatus Phytoplasma australiense Candidatus Phytoplasma australiense 684 37692 peripheral species Candidatus Phytoplasma mali Phytoplasma mali Candidatus Phytoplasma mali Candidatus Phytoplasma mali 479 413404 peripheral species Candidatus Ruthia magnifica Cm Calyptogena magnifica Ruthia magnifica Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) Candidatus Ruthia magnifica Cm Calyptogena magnifica 976 444179 core species Candidatus Sulcia muelleri GWSS Sulcia muelleri GWSS Candidatus Sulcia muelleri GWSS Candidatus Sulcia muelleri GWSS 227 595499 peripheral species Candidatus Sulcia muelleri SMDSEM Sulcia muelleri SMDSEM Candidatus Sulcia muelleri SMDSEM Candidatus Sulcia muelleri SMDSEM 242 412965 peripheral species Candidatus Vesicomyosocius okutanii HA Vesicomyosocius okutanii Candidatus Vesicomyosocius okutanii HA Candidatus Vesicomyosocius okutanii HA 937 9615 core species Canis familiaris Canis lupus familiaris Canis lupus familiaris Canis familiaris 19305 521097 core species Capnocytophaga ochracea DSM 7271 Capnocytophaga ochracea Capnocytophaga ochracea DSM 7271 Capnocytophaga ochracea DSM 7271 2171 246194 core species Carboxydothermus hydrogenoformans Z-2901 Carboxydothermus hydrogenoformans Carboxydothermus hydrogenoformans Z-2901 Carboxydothermus hydrogenoformans Z-2901 2620 479433 core species Catenulispora acidiphila DSM 44928 Catenulispora acidiphila Catenulispora acidiphila DSM 44928 Catenulispora acidiphila DSM 44928 8913 190650 core species Caulobacter crescentus Caulobacter crescentus CB15 Caulobacter crescentus CB15 Caulobacter crescentus 3737 565050 peripheral species Caulobacter crescentus NA1000 Caulobacter crescentus NA1000 Caulobacter crescentus NA1000 Caulobacter crescentus NA1000 3876 366602 peripheral species Caulobacter K31 Caulobacter sp. K31 Caulobacter sp. K31 Caulobacter K31 5438 10141 peripheral species Cavia porcellus Cavia porcellus Cavia porcellus Cavia porcellus 18673 498211 core species Cellvibrio japonicus Ueda107 Cellvibrio japonicus Cellvibrio japonicus Ueda107 Cellvibrio japonicus Ueda107 3754 485918 core species Chitinophaga pinensis DSM 2588 Chitinophaga pinensis Chitinophaga pinensis DSM 2588 Chitinophaga pinensis DSM 2588 7192 243161 peripheral species Chlamydia muridarum Chlamydia muridarum Chlamydia muridarum Nigg Chlamydia muridarum 911 471472 peripheral species Chlamydia trachomatis 434 Bu Chlamydia trachomatis 434/Bu Chlamydia trachomatis 434/Bu Chlamydia trachomatis 434 Bu 874 315277 peripheral species Chlamydia trachomatis A HAR-13 Chlamydia trachomatis HAR13 Chlamydia trachomatis A/HAR-13 Chlamydia trachomatis A HAR-13 919 580049 peripheral species Chlamydia trachomatis B Jali20 OT Chlamydia trachomatis Jali20 Chlamydia trachomatis B/Jali20/OT Chlamydia trachomatis B Jali20 OT 875 672161 peripheral species Chlamydia trachomatis B TZ1A828 OT Chlamydia trachomatis TZ1A828 Chlamydia trachomatis B/TZ1A828/OT Chlamydia trachomatis B TZ1A828 OT 880 272561 core species Chlamydia trachomatis D UW 3 CX Chlamydia trachomatis UW-3 Chlamydia trachomatis D/UW-3/CX Chlamydia trachomatis D UW 3 CX 895 471473 peripheral species Chlamydia trachomatis L2b UCH 1 proctitis Chlamydia trachomatis UCH1 Chlamydia trachomatis L2b/UCH-1/proctitis Chlamydia trachomatis L2b UCH 1 proctitis 874 3055 peripheral species Chlamydomonas reinhardtii Chlamydomonas reinhardtii Chlamydomonas reinhardtii Chlamydomonas reinhardtii 16709 218497 peripheral species Chlamydophila abortus S26 3 Chlamydophila abortus Chlamydophila abortus S26/3 Chlamydophila abortus S26 3 932 227941 peripheral species Chlamydophila caviae Chlamydophila caviae Chlamydophila caviae GPIC Chlamydophila caviae 1005 264202 peripheral species Chlamydophila felis Fe C-56 Chlamydophila felis Chlamydophila felis Fe/C-56 Chlamydophila felis Fe C-56 1013 115711 peripheral species Chlamydophila pneumoniae AR39 Chlamydophila pneumoniae AR39 Chlamydophila pneumoniae AR39 Chlamydophila pneumoniae AR39 1112 115713 core species Chlamydophila pneumoniae CWL029 Chlamydophila pneumoniae CWL029 Chlamydophila pneumoniae CWL029 Chlamydophila pneumoniae CWL029 1052 138677 peripheral species Chlamydophila pneumoniae J138 Chlamydophila pneumoniae J138 Chlamydophila pneumoniae J138 Chlamydophila pneumoniae J138 1069 182082 peripheral species Chlamydophila pneumoniae TW 183 Chlamydophila pneumoniae TW183 Chlamydophila pneumoniae TW-183 Chlamydophila pneumoniae TW 183 1113 517417 core species Chlorobaculum parvum NCIB 8327 Chlorobaculum parvum Chlorobaculum parvum NCIB 8327 Chlorobaculum parvum NCIB 8327 2043 340177 peripheral species Chlorobium chlorochromatii CaD3 Chlorobium chlorochromatii Chlorobium chlorochromatii CaD3 Chlorobium chlorochromatii CaD3 2002 290315 peripheral species Chlorobium limicola DSM 245 Chlorobium limicola Chlorobium limicola DSM 245 Chlorobium limicola DSM 245 2434 319225 peripheral species Chlorobium luteolum DSM 273 Chlorobium luteolum Chlorobium luteolum DSM 273 Chlorobium luteolum DSM 273 2083 331678 peripheral species Chlorobium phaeobacteroides BS1 Chlorobium phaeobacteroides BS1 Chlorobium phaeobacteroides BS1 Chlorobium phaeobacteroides BS1 2469 290317 peripheral species Chlorobium phaeobacteroides DSM 266 Chlorobium phaeobacteroides 266 Chlorobium phaeobacteroides DSM 266 Chlorobium phaeobacteroides DSM 266 2650 194439 core species Chlorobium tepidum TLS Chlorobium tepidum Chlorobium tepidum TLS Chlorobium tepidum TLS 2245 326427 peripheral species Chloroflexus aggregans DSM 9485 Chloroflexus aggregans Chloroflexus aggregans DSM 9485 Chloroflexus aggregans DSM 9485 3730 324602 core species Chloroflexus aurantiacus J 10 fl Chloroflexus aurantiacus Chloroflexus aurantiacus J-10-fl Chloroflexus aurantiacus J 10 fl 3853 480224 peripheral species Chloroflexus Y 400 fl Chloroflexus sp. Y400 Chloroflexus sp. Y-400-fl Chloroflexus Y 400 fl 4159 517418 core species Chloroherpeton thalassium ATCC 35110 Chloroherpeton thalassium Chloroherpeton thalassium ATCC 35110 Chloroherpeton thalassium ATCC 35110 2710 243365 core species Chromobacterium violaceum Chromobacterium violaceum Chromobacterium violaceum ATCC 12472 Chromobacterium violaceum 4407 290398 core species Chromohalobacter salexigens DSM 3043 Chromohalobacter salexigens Chromohalobacter salexigens DSM 3043 Chromohalobacter salexigens DSM 3043 3298 7719 core species Ciona intestinalis Ciona intestinalis Ciona intestinalis Ciona intestinalis 14180 51511 peripheral species Ciona savignyi Ciona savignyi Ciona savignyi Ciona savignyi 11604 290338 core species Citrobacter koseri ATCC BAA-895 Citrobacter koseri Citrobacter koseri ATCC BAA-895 Citrobacter koseri ATCC BAA-895 5008 443906 core species Clavibacter michiganensis NCPPB 382 Clavibacter michiganensis 382 Clavibacter michiganensis subsp. michiganensis NCPPB 382 Clavibacter michiganensis NCPPB 382 3078 31964 peripheral species Clavibacter michiganensis sepedonicus Clavibacter michiganensis SPDN Clavibacter michiganensis subsp. sepedonicus Clavibacter michiganensis sepedonicus 3116 272562 core species Clostridium acetobutylicum Clostridium acetobutylicum Clostridium acetobutylicum ATCC 824 Clostridium acetobutylicum 3847 290402 peripheral species Clostridium beijerinckii NCIMB 8052 Clostridium beijerinckii Clostridium beijerinckii NCIMB 8052 Clostridium beijerinckii NCIMB 8052 5020 413999 peripheral species Clostridium botulinum A Clostridium botulinum 3502 Clostridium botulinum A str. ATCC 3502 Clostridium botulinum A 3590 441770 peripheral species Clostridium botulinum A ATCC 19397 Clostridium botulinum 19397 Clostridium botulinum A str. ATCC 19397 Clostridium botulinum A ATCC 19397 3550 441771 peripheral species Clostridium botulinum A Hall Clostridium botulinum Hall Clostridium botulinum A str. Hall Clostridium botulinum A Hall 3401 536232 peripheral species Clostridium botulinum A2 Kyoto Clostridium botulinum Kyoto Clostridium botulinum A2 str. Kyoto Clostridium botulinum A2 Kyoto 3877 498214 peripheral species Clostridium botulinum A3 Loch Maree Clostridium botulinum Maree Clostridium botulinum A3 str. Loch Maree Clostridium botulinum A3 Loch Maree 3983 508765 peripheral species Clostridium botulinum B Eklund 17B Clostridium botulinum Eklund Clostridium botulinum B str. Eklund 17B Clostridium botulinum B Eklund 17B 3475 498213 peripheral species Clostridium botulinum B1 Okra Clostridium botulinum Okra Clostridium botulinum B1 str. Okra Clostridium botulinum B1 Okra 3846 515621 peripheral species Clostridium botulinum Ba4 657 Clostridium botulinum 657 Clostridium botulinum Ba4 str. 657 Clostridium botulinum Ba4 657 4002 508767 peripheral species Clostridium botulinum E3 Alaska E43 Clostridium botulinum Alaska Clostridium botulinum E3 str. Alaska E43 Clostridium botulinum E3 Alaska E43 3257 441772 peripheral species Clostridium botulinum F Langeland Clostridium botulinum Langeland Clostridium botulinum F str. Langeland Clostridium botulinum F Langeland 3655 394503 peripheral species Clostridium cellulolyticum H10 Clostridium cellulolyticum Clostridium cellulolyticum H10 Clostridium cellulolyticum H10 3390 272563 peripheral species Clostridium difficile 630 Clostridium difficile 630 Clostridium difficile 630 Clostridium difficile 630 3728 645462 peripheral species Clostridium difficile CD196 Clostridium difficile CD196 Clostridium difficile CD196 Clostridium difficile CD196 3454 645463 peripheral species Clostridium difficile R20291 Clostridium difficile R20291 Clostridium difficile R20291 Clostridium difficile R20291 3507 431943 peripheral species Clostridium kluyveri DSM 555 Clostridium kluyveri 555 Clostridium kluyveri DSM 555 Clostridium kluyveri DSM 555 3913 583346 peripheral species Clostridium kluyveri NBRC 12016 Clostridium kluyveri 12016 Clostridium kluyveri NBRC 12016 Clostridium kluyveri NBRC 12016 3523 386415 peripheral species Clostridium novyi NT Clostridium novyi Clostridium novyi NT Clostridium novyi NT 2315 195102 peripheral species Clostridium perfringens Clostridium perfringens 13 Clostridium perfringens str. 13 Clostridium perfringens 2723 195103 peripheral species Clostridium perfringens ATCC 13124 Clostridium perfringens 13124 Clostridium perfringens ATCC 13124 Clostridium perfringens ATCC 13124 2876 289380 peripheral species Clostridium perfringens SM101 Clostridium perfringens SM101 Clostridium perfringens SM101 Clostridium perfringens SM101 2566 357809 peripheral species Clostridium phytofermentans ISDg Clostridium phytofermentans Clostridium phytofermentans ISDg Clostridium phytofermentans ISDg 3902 212717 peripheral species Clostridium tetani E88 Clostridium tetani Clostridium tetani E88 Clostridium tetani E88 2432 203119 peripheral species Clostridium thermocellum ATCC 27405 Clostridium thermocellum Clostridium thermocellum ATCC 27405 Clostridium thermocellum ATCC 27405 3189 222929 peripheral species Coccidioides posadasii Coccidioides posadasii Coccidioides posadasii Coccidioides posadasii 7226 167879 core species Colwellia psychrerythraea 34H Colwellia psychrerythraea Colwellia psychrerythraea 34H Colwellia psychrerythraea 34H 4910 688245 core species Comamonas testosteroni CNB 1 Comamonas testosteroni Comamonas testosteroni CNB-2 Comamonas testosteroni CNB 1 4799 309798 core species Coprothermobacter proteolyticus DSM 5265 Coprothermobacter proteolyticus Coprothermobacter proteolyticus DSM 5265 Coprothermobacter proteolyticus DSM 5265 1482 169292 peripheral species Corynebacterium aurimucosum ATCC 700975 Corynebacterium aurimucosum Corynebacterium aurimucosum Corynebacterium aurimucosum ATCC 700975 2551 257309 peripheral species Corynebacterium diphtheriae Corynebacterium diphtheriae Corynebacterium diphtheriae NCTC 13129 Corynebacterium diphtheriae 2268 196164 core species Corynebacterium efficiens YS-314 Corynebacterium efficiens Corynebacterium efficiens YS-314 Corynebacterium efficiens YS-314 2994 196627 peripheral species Corynebacterium glutamicum ATCC 13032 Bielefeld Corynebacterium glutamicum 13032 Corynebacterium glutamicum ATCC 13032 Corynebacterium glutamicum ATCC 13032 Bielefeld 3057 340322 peripheral species Corynebacterium glutamicum R Corynebacterium glutamicum R Corynebacterium glutamicum R Corynebacterium glutamicum R 3080 306537 peripheral species Corynebacterium jeikeium K411 Corynebacterium jeikeium Corynebacterium jeikeium K411 Corynebacterium jeikeium K411 2120 645127 peripheral species Corynebacterium kroppenstedtii DSM 44385 Corynebacterium kroppenstedtii Corynebacterium kroppenstedtii DSM 44385 Corynebacterium kroppenstedtii DSM 44385 2018 504474 peripheral species Corynebacterium urealyticum DSM 7109 Corynebacterium urealyticum Corynebacterium urealyticum DSM 7109 Corynebacterium urealyticum DSM 7109 2022 227377 core species Coxiella burnetii Coxiella burnetii 493 Coxiella burnetii RSA 493 Coxiella burnetii 1847 434923 peripheral species Coxiella burnetii CbuG Q212 Coxiella burnetii Q212 Coxiella burnetii CbuG_Q212 Coxiella burnetii CbuG Q212 1866 434924 peripheral species Coxiella burnetii CbuK Q154 Coxiella burnetii Q154 Coxiella burnetii CbuK_Q154 Coxiella burnetii CbuK Q154 1942 434922 peripheral species Coxiella burnetii Dugway 7E9-12 Coxiella burnetii Dugway Coxiella burnetii Dugway 5J108-111 Coxiella burnetii Dugway 7E9-12 2045 360115 peripheral species Coxiella burnetii RSA 331 Coxiella burnetii 331 Coxiella burnetii RSA 331 Coxiella burnetii RSA 331 1975 413502 peripheral species Cronobacter turicensis Cronobacter turicensis Cronobacter turicensis Cronobacter turicensis 4455 469378 core species Cryptobacterium curtum DSM 15641 Cryptobacterium curtum Cryptobacterium curtum DSM 15641 Cryptobacterium curtum DSM 15641 1357 214684 peripheral species Cryptococcus neoformans var JEC21 Cryptococcus neoformans Cryptococcus neoformans var. neoformans JEC21 Cryptococcus neoformans var JEC21 6273 237895 peripheral species Cryptosporidium hominis Cryptosporidium hominis Cryptosporidium hominis Cryptosporidium hominis 3886 5807 core species Cryptosporidium parvum Cryptosporidium parvum Cryptosporidium parvum Cryptosporidium parvum 3514 7176 peripheral species Culex quinquefasciatus Culex quinquefasciatus Culex quinquefasciatus Culex quinquefasciatus 18883 164546 core species Cupriavidus taiwanensis Cupriavidus taiwanensis Cupriavidus taiwanensis Cupriavidus taiwanensis 5896 321327 peripheral species Cyanobacteria bacterium Yellowstone A-Prime Synechococcus sp. JA33 Synechococcus sp. JA-3-3Ab Cyanobacteria bacterium Yellowstone A-Prime 2760 321332 peripheral species Cyanobacteria bacterium Yellowstone B-Prime Synechococcus sp. JA23 Synechococcus sp. JA-2-3B'a(2-13) Cyanobacteria bacterium Yellowstone B-Prime 2862 43989 core species Cyanothece ATCC 51142 Cyanothece sp. 51142 Cyanothece sp. ATCC 51142 Cyanothece ATCC 51142 5303 65393 peripheral species Cyanothece PCC 7424 Cyanothece sp. 7424 Cyanothece sp. PCC 7424 Cyanothece PCC 7424 5710 395961 peripheral species Cyanothece PCC 7425 Cyanothece sp. 7425 Cyanothece sp. PCC 7425 Cyanothece PCC 7425 5327 41431 peripheral species Cyanothece PCC 8801 Cyanothece sp. 8801 Cyanothece sp. PCC 8801 Cyanothece PCC 8801 4367 395962 peripheral species Cyanothece PCC 8802 Cyanothece sp. 8802 Cyanothece sp. PCC 8802 Cyanothece PCC 8802 4444 269798 core species Cytophaga hutchinsonii ATCC 33406 Cytophaga hutchinsonii Cytophaga hutchinsonii ATCC 33406 Cytophaga hutchinsonii ATCC 33406 3785 7955 peripheral species Danio rerio Danio rerio Danio rerio Danio rerio 24147 9361 peripheral species Dasypus novemcinctus Dasypus novemcinctus Dasypus novemcinctus Dasypus novemcinctus 14803 4959 core species Debaryomyces hansenii Debaryomyces hansenii Debaryomyces hansenii Debaryomyces hansenii 6242 159087 core species Dechloromonas aromatica RCB Dechloromonas aromatica Dechloromonas aromatica RCB Dechloromonas aromatica RCB 4171 216389 peripheral species Dehalococcoides BAV1 Dehalococcoides sp. BAV1 Dehalococcoides sp. BAV1 Dehalococcoides BAV1 1371 255470 peripheral species Dehalococcoides CBDB1 Dehalococcoides sp. CBDB1 Dehalococcoides sp. CBDB1 Dehalococcoides CBDB1 1458 243164 core species Dehalococcoides ethenogenes 195 Dehalococcoides ethenogenes Dehalococcoides ethenogenes 195 Dehalococcoides ethenogenes 195 1580 311424 peripheral species Dehalococcoides VS Dehalococcoides sp. VS Dehalococcoides sp. VS Dehalococcoides VS 1438 546414 peripheral species Deinococcus deserti VCD115 Deinococcus deserti Deinococcus deserti VCD115 Deinococcus deserti VCD115 3451 319795 peripheral species Deinococcus geothermalis DSM 11300 Deinococcus geothermalis Deinococcus geothermalis DSM 11300 Deinococcus geothermalis DSM 11300 3054 243230 core species Deinococcus radiodurans Deinococcus radiodurans Deinococcus radiodurans R1 Deinococcus radiodurans 3167 398578 core species Delftia acidovorans SPH-1 Delftia acidovorans Delftia acidovorans SPH-1 Delftia acidovorans SPH-1 6040 439235 core species Desulfatibacillum alkenivorans AK 01 Desulfatibacillum alkenivorans Desulfatibacillum alkenivorans AK-01 Desulfatibacillum alkenivorans AK 01 5252 272564 peripheral species Desulfitobacterium hafniense DCB 2 Desulfitobacterium hafniense DCB2 Desulfitobacterium hafniense DCB-2 Desulfitobacterium hafniense DCB 2 4883 138119 core species Desulfitobacterium hafniense Y51 Desulfitobacterium hafniense Y51 Desulfitobacterium hafniense Y51 Desulfitobacterium hafniense Y51 5060 177437 core species Desulfobacterium autotrophicum HRM2 Desulfobacterium autotrophicum Desulfobacterium autotrophicum HRM2 Desulfobacterium autotrophicum HRM2 4943 485915 core species Desulfohalobium retbaense DSM 5692 Desulfohalobium retbaense Desulfohalobium retbaense DSM 5692 Desulfohalobium retbaense DSM 5692 2526 525897 core species Desulfomicrobium baculatum DSM 4028 Desulfomicrobium baculatum Desulfomicrobium baculatum DSM 4028 Desulfomicrobium baculatum DSM 4028 3436 177439 core species Desulfotalea psychrophila LSv54 Desulfotalea psychrophila Desulfotalea psychrophila LSv54 Desulfotalea psychrophila LSv54 3234 485916 peripheral species Desulfotomaculum acetoxidans DSM 771 Desulfotomaculum acetoxidans Desulfotomaculum acetoxidans DSM 771 Desulfotomaculum acetoxidans DSM 771 4068 349161 core species Desulfotomaculum reducens MI-1 Desulfotomaculum reducens Desulfotomaculum reducens MI-1 Desulfotomaculum reducens MI-1 3276 525146 peripheral species Desulfovibrio desulfuricans ATCC 27774 Desulfovibrio desulfuricans 27774 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Desulfovibrio desulfuricans ATCC 27774 2356 207559 peripheral species Desulfovibrio desulfuricans G20 Desulfovibrio desulfuricans G20 Desulfovibrio desulfuricans subsp. desulfuricans str. G20 Desulfovibrio desulfuricans G20 3775 573370 peripheral species Desulfovibrio magneticus RS 1 Desulfovibrio magneticus Desulfovibrio magneticus RS-1 Desulfovibrio magneticus RS 1 4700 526222 peripheral species Desulfovibrio salexigens DSM 2638 Desulfovibrio salexigens Desulfovibrio salexigens DSM 2638 Desulfovibrio salexigens DSM 2638 3807 883 peripheral species Desulfovibrio vulgaris Miyazaki F Desulfovibrio vulgaris Miyazaki Desulfovibrio vulgaris str. 'Miyazaki F' Desulfovibrio vulgaris Miyazaki F 3180 391774 peripheral species Desulfovibrio vulgaris DP4 Desulfovibrio vulgaris DP4 Desulfovibrio vulgaris DP4 Desulfovibrio vulgaris DP4 3091 882 core species Desulfovibrio vulgaris Hildenborough Desulfovibrio vulgaris Hildenborough Desulfovibrio vulgaris str. Hildenborough Desulfovibrio vulgaris Hildenborough 3531 490899 core species Desulfurococcus kamchatkensis 1221n Desulfurococcus kamchatkensis Desulfurococcus kamchatkensis 1221n Desulfurococcus kamchatkensis 1221n 1471 535289 core species Diaphorobacter TPSY Diaphorobacter sp. TPSY Diaphorobacter sp. TPSY Diaphorobacter TPSY 3479 246195 core species Dichelobacter nodosus VCS1703A Dichelobacter nodosus Dichelobacter nodosus VCS1703A Dichelobacter nodosus VCS1703A 1280 590409 peripheral species Dickeya dadantii Ech586 Dickeya dadantii Ech586 Dickeya dadantii Ech586 Dickeya dadantii Ech586 4144 579405 core species Dickeya dadantii Ech703 Dickeya dadantii Ech703 Dickeya dadantii Ech703 Dickeya dadantii Ech703 3970 561229 peripheral species Dickeya zeae Ech1591 Dickeya zeae Dickeya zeae Ech1591 Dickeya zeae Ech1591 4163 309799 core species Dictyoglomus thermophilum H 6 12 Dictyoglomus thermophilum Dictyoglomus thermophilum H-6-12 Dictyoglomus thermophilum H 6 12 1912 515635 peripheral species Dictyoglomus turgidum DSM 6724 Dictyoglomus turgidum Dictyoglomus turgidum DSM 6724 Dictyoglomus turgidum DSM 6724 1744 44689 core species Dictyostelium discoideum Dictyostelium discoideum Dictyostelium discoideum Dictyostelium discoideum 13316 398580 core species Dinoroseobacter shibae DFL 12 Dinoroseobacter shibae Dinoroseobacter shibae DFL 12 Dinoroseobacter shibae DFL 12 4192 7217 peripheral species Drosophila ananassae Drosophila ananassae Drosophila ananassae Drosophila ananassae 15069 7222 peripheral species Drosophila grimshawi Drosophila grimshawi Drosophila grimshawi Drosophila grimshawi 14982 7227 core species Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster 14076 7237 peripheral species Drosophila pseudoobscura Drosophila pseudoobscura Drosophila pseudoobscura Drosophila pseudoobscura 16071 7244 peripheral species Drosophila virilis Drosophila virilis Drosophila virilis Drosophila virilis 14491 7260 peripheral species Drosophila willistoni Drosophila willistoni Drosophila willistoni Drosophila willistoni 15512 7245 peripheral species Drosophila yakuba Drosophila yakuba Drosophila yakuba Drosophila yakuba 16077 471854 core species Dyadobacter fermentans DSM 18053 Dyadobacter fermentans Dyadobacter fermentans DSM 18053 Dyadobacter fermentans DSM 18053 5719 634503 core species Edwardsiella ictaluri 93 146 Edwardsiella ictaluri Edwardsiella ictaluri 93-146 Edwardsiella ictaluri 93 146 3783 498217 peripheral species Edwardsiella tarda EIB202 Edwardsiella tarda Edwardsiella tarda EIB202 Edwardsiella tarda EIB202 3588 479437 core species Eggerthella lenta DSM 2243 Eggerthella lenta Eggerthella lenta DSM 2243 Eggerthella lenta DSM 2243 3070 269484 peripheral species Ehrlichia canis Jake Ehrlichia canis Ehrlichia canis str. Jake Ehrlichia canis Jake 925 205920 peripheral species Ehrlichia chaffeensis Arkansas Ehrlichia chaffeensis Ehrlichia chaffeensis str. Arkansas Ehrlichia chaffeensis Arkansas 1105 302409 peripheral species Ehrlichia ruminantium Gardel Ehrlichia ruminantium Gardel Ehrlichia ruminantium str. Gardel Ehrlichia ruminantium Gardel 950 254945 core species Ehrlichia ruminantium Welgevonden UPSA Ehrlichia ruminantium UPSA Ehrlichia ruminantium str. Welgevonden Ehrlichia ruminantium Welgevonden UPSA 888 445932 core species Elusimicrobium minutum Pei191 Elusimicrobium minutum Elusimicrobium minutum Pei191 Elusimicrobium minutum Pei191 1529 6035 peripheral species Encephalitozoon cuniculi Encephalitozoon cuniculi Encephalitozoon cuniculi Encephalitozoon cuniculi 1996 399742 peripheral species Enterobacter 638 Enterobacter sp. 638 Enterobacter sp. 638 Enterobacter 638 4240 290339 core species Enterobacter sakazakii ATCC BAA-894 Cronobacter sakazakii Cronobacter sakazakii ATCC BAA-894 Enterobacter sakazakii ATCC BAA-894 4420 226185 core species Enterococcus faecalis V583 Enterococcus faecalis Enterococcus faecalis V583 Enterococcus faecalis V583 3264 9796 peripheral species Equus caballus Equus caballus Equus caballus Equus caballus 20436 33169 peripheral species Eremothecium gossypii Eremothecium gossypii Eremothecium gossypii Eremothecium gossypii 4719 218491 core species Erwinia carotovora atroseptica SCRI1043 Pectobacterium atrosepticum Pectobacterium atrosepticum SCRI1043 Erwinia carotovora atroseptica SCRI1043 4451 634499 peripheral species Erwinia pyrifoliae Ep1 96 Erwinia pyrifoliae Erwinia pyrifoliae Ep1/96 Erwinia pyrifoliae Ep1 96 3682 465817 peripheral species Erwinia tasmaniensis Erwinia tasmaniensis Erwinia tasmaniensis Et1/99 Erwinia tasmaniensis 3622 314225 core species Erythrobacter litoralis HTCC2594 Erythrobacter litoralis Erythrobacter litoralis HTCC2594 Erythrobacter litoralis HTCC2594 3011 574521 peripheral species Escherichia coli 0127 H6 E2348 69 Escherichia coli E2348 Escherichia coli O127:H6 str. E2348/69 Escherichia coli 0127 H6 E2348 69 4651 362663 peripheral species Escherichia coli 536 Escherichia coli 536 Escherichia coli 536 Escherichia coli 536 4619 585055 peripheral species Escherichia coli 55989 Escherichia coli 55989 Escherichia coli 55989 Escherichia coli 55989 4759 405955 peripheral species Escherichia coli APEC O1 Escherichia coli APECO1 Escherichia coli APEC O1 Escherichia coli APEC O1 4851 413997 peripheral species Escherichia coli B REL606 Escherichia coli REL606 Escherichia coli B str. REL606 Escherichia coli B REL606 4205 469008 peripheral species Escherichia coli BL21 DE3 Escherichia coli BL21 Escherichia coli BL21(DE3) Escherichia coli BL21 DE3 4228 595496 peripheral species Escherichia coli BW2952 Escherichia coli BW2952 Escherichia coli BW2952 Escherichia coli BW2952 4084 481805 peripheral species Escherichia coli C ATCC 8739 Escherichia coli 8739 Escherichia coli ATCC 8739 Escherichia coli C ATCC 8739 4199 199310 peripheral species Escherichia coli CFT073 Escherichia coli CFT073 Escherichia coli CFT073 Escherichia coli CFT073 5338 331111 peripheral species Escherichia coli E24377A Escherichia coli E24377A Escherichia coli E24377A Escherichia coli E24377A 4991 585397 peripheral species Escherichia coli ED1a Escherichia coli ED1a Escherichia coli ED1a Escherichia coli ED1a 4915 331112 peripheral species Escherichia coli HS Escherichia coli HS Escherichia coli HS Escherichia coli HS 4378 585034 peripheral species Escherichia coli IAI1 Escherichia coli IAI1 Escherichia coli IAI1 Escherichia coli IAI1 4351 585057 peripheral species Escherichia coli IAI39 Escherichia coli IAI39 Escherichia coli IAI39 Escherichia coli IAI39 4730 316385 peripheral species Escherichia coli K 12 substr DH10B Escherichia coli K12_DH10B Escherichia coli str. K-12 substr. DH10B Escherichia coli K 12 substr DH10B 4126 511145 core species Escherichia coli K 12 substr MG1655 Escherichia coli K12_MG1655 Escherichia coli str. K-12 substr. MG1655 Escherichia coli K 12 substr MG1655 4149 316407 peripheral species Escherichia coli K 12 substr W3110 Escherichia coli K12_W3110 Escherichia coli str. K-12 substr. W3110 Escherichia coli K 12 substr W3110 4161 585395 peripheral species Escherichia coli O103 H2 12009 Escherichia coli 12009 Escherichia coli O103:H2 str. 12009 Escherichia coli O103 H2 12009 5121 585396 peripheral species Escherichia coli O111 H 11128 Escherichia coli 11128 Escherichia coli O111:H- str. 11128 Escherichia coli O111 H 11128 5407 444450 peripheral species Escherichia coli O157 H7 EC4115 Escherichia coli EC4115 Escherichia coli O157:H7 str. EC4115 Escherichia coli O157 H7 EC4115 5477 544404 peripheral species Escherichia coli O157 H7 TW14359 Escherichia coli TW14359 Escherichia coli O157:H7 str. TW14359 Escherichia coli O157 H7 TW14359 5365 386585 peripheral species Escherichia coli O157H7 Escherichia coli Sakai Escherichia coli O157:H7 str. Sakai Escherichia coli O157H7 5317 155864 peripheral species Escherichia coli O157H7 EDL933 Escherichia coli EDL933 Escherichia coli O157:H7 EDL933 Escherichia coli O157H7 EDL933 5395 573235 peripheral species Escherichia coli O26 H11 11368 Escherichia coli 11368 Escherichia coli O26:H11 str. 11368 Escherichia coli O26 H11 11368 5516 585035 peripheral species Escherichia coli S88 Escherichia coli S88 Escherichia coli S88 Escherichia coli S88 4827 409438 peripheral species Escherichia coli SE11 Escherichia coli SE11 Escherichia coli SE11 Escherichia coli SE11 5002 439855 peripheral species Escherichia coli SMS 3 5 Escherichia coli SMS35 Escherichia coli SMS-3-5 Escherichia coli SMS 3 5 4913 585056 peripheral species Escherichia coli UMN026 Escherichia coli UMN026 Escherichia coli UMN026 Escherichia coli UMN026 5016 364106 peripheral species Escherichia coli UTI89 Escherichia coli UTI89 Escherichia coli UTI89 Escherichia coli UTI89 5166 585054 peripheral species Escherichia fergusonii ATCC 35469 Escherichia fergusonii Escherichia fergusonii ATCC 35469 Escherichia fergusonii ATCC 35469 4319 515620 core species Eubacterium eligens ATCC 27750 Eubacterium eligens Eubacterium eligens ATCC 27750 Eubacterium eligens ATCC 27750 2765 515619 peripheral species Eubacterium rectale ATCC 33656 Eubacterium rectale Eubacterium rectale ATCC 33656 Eubacterium rectale ATCC 33656 3621 360911 peripheral species Exiguobacterium AT1b Exiguobacterium sp. AT1b Exiguobacterium sp. AT1b Exiguobacterium AT1b 3020 262543 core species Exiguobacterium sibiricum 255 15 Exiguobacterium sibiricum Exiguobacterium sibiricum 255-15 Exiguobacterium sibiricum 255 15 3015 9685 peripheral species Felis catus Felis catus Felis catus Felis catus 15048 381764 core species Fervidobacterium nodosum Rt17-B1 Fervidobacterium nodosum Fervidobacterium nodosum Rt17-B1 Fervidobacterium nodosum Rt17-B1 1750 59374 core species Fibrobacter succinogenes S85 Fibrobacter succinogenes Fibrobacter succinogenes subsp. succinogenes S85 Fibrobacter succinogenes S85 3085 334413 core species Finegoldia magna ATCC 29328 Finegoldia magna Finegoldia magna ATCC 29328 Finegoldia magna ATCC 29328 1813 531844 core species Flavobacteriaceae bacterium 3519 10 Flavobacteriaceae bacterium Flavobacteriaceae bacterium 3519-10 Flavobacteriaceae bacterium 3519 10 2534 376686 core species Flavobacterium johnsoniae UW101 Flavobacterium johnsoniae Flavobacterium johnsoniae UW101 Flavobacterium johnsoniae UW101 5017 402612 peripheral species Flavobacterium psychrophilum JIP02 86 Flavobacterium psychrophilum Flavobacterium psychrophilum JIP02/86 Flavobacterium psychrophilum JIP02 86 2412 484022 peripheral species Francisella philomiragia ATCC 25017 Francisella philomiragia Francisella philomiragia subsp. philomiragia ATCC 25017 Francisella philomiragia ATCC 25017 1915 393115 peripheral species Francisella tularensis FSC 198 Francisella tularensis FSC198 Francisella tularensis subsp. tularensis FSC198 Francisella tularensis FSC 198 1605 119857 peripheral species Francisella tularensis holarctica Francisella tularensis holarctica Francisella tularensis subsp. holarctica Francisella tularensis holarctica 1754 458234 peripheral species Francisella tularensis holarctica FTNF002 00 Francisella tularensis FTNF002 Francisella tularensis subsp. holarctica FTNF002-00 Francisella tularensis holarctica FTNF002 00 1580 393011 peripheral species Francisella tularensis holarctica OSU18 Francisella tularensis OSU18 Francisella tularensis subsp. holarctica OSU18 Francisella tularensis holarctica OSU18 1555 441952 peripheral species Francisella tularensis mediasiatica FSC147 Francisella tularensis FSC147 Francisella tularensis subsp. mediasiatica FSC147 Francisella tularensis mediasiatica FSC147 1406 401614 peripheral species Francisella tularensis novicida U112 Francisella novicida Francisella novicida U112 Francisella tularensis novicida U112 1719 177416 core species Francisella tularensis tularensis Francisella tularensis SCHUS4 Francisella tularensis subsp. tularensis SCHU S4 Francisella tularensis tularensis 1604 418136 peripheral species Francisella tularensis WY96-3418 Francisella tularensis WY96 Francisella tularensis subsp. tularensis WY96-3418 Francisella tularensis WY96-3418 1634 326424 peripheral species Frankia alni ACN14a Frankia alni Frankia alni ACN14a Frankia alni ACN14a 6707 106370 core species Frankia CcI3 Frankia sp. CcI3 Frankia sp. CcI3 Frankia CcI3 4499 298653 peripheral species Frankia EAN1pec Frankia sp. EAN1pec Frankia sp. EAN1pec Frankia EAN1pec 7191 190304 core species Fusobacterium nucleatum Fusobacterium nucleatum Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Fusobacterium nucleatum 2063 9031 core species Gallus gallus Gallus gallus Gallus gallus Gallus gallus 16736 69293 core species Gasterosteus aculeatus Gasterosteus aculeatus Gasterosteus aculeatus Gasterosteus aculeatus 20787 379066 core species Gemmatimonas aurantiaca T 27 Gemmatimonas aurantiaca Gemmatimonas aurantiaca T-27 Gemmatimonas aurantiaca T 27 3935 235909 core species Geobacillus kaustophilus HTA426 Geobacillus kaustophilus Geobacillus kaustophilus HTA426 Geobacillus kaustophilus HTA426 3539 420246 peripheral species Geobacillus thermodenitrificans NG80-2 Geobacillus thermodenitrificans Geobacillus thermodenitrificans NG80-2 Geobacillus thermodenitrificans NG80-2 3445 471223 peripheral species Geobacillus WCH70 Geobacillus sp. WCH70 Geobacillus sp. WCH70 Geobacillus WCH70 3168 481743 peripheral species Geobacillus Y412MC10 Geobacillus sp. Y412MC10 Geobacillus sp. Y412MC10 Geobacillus Y412MC10 6238 544556 peripheral species Geobacillus Y412MC61 Geobacillus sp. Y412MC61 Geobacillus sp. Y412MC61 Geobacillus Y412MC61 3446 404380 peripheral species Geobacter bemidjiensis Bem Geobacter bemidjiensis Geobacter bemidjiensis Bem Geobacter bemidjiensis Bem 4018 316067 peripheral species Geobacter FRC 32 Geobacter sp. FRC32 Geobacter sp. FRC-32 Geobacter FRC 32 3798 398767 peripheral species Geobacter lovleyi SZ Geobacter lovleyi Geobacter lovleyi SZ Geobacter lovleyi SZ 3685 443144 peripheral species Geobacter M21 Geobacter sp. M21 Geobacter sp. M21 Geobacter M21 4080 269799 peripheral species Geobacter metallireducens GS-15 Geobacter metallireducens Geobacter metallireducens GS-15 Geobacter metallireducens GS-15 3532 243231 core species Geobacter sulfurreducens Geobacter sulfurreducens Geobacter sulfurreducens PCA Geobacter sulfurreducens 3445 351605 peripheral species Geobacter uraniumreducens Rf4 Geobacter uraniireducens Geobacter uraniireducens Rf4 Geobacter uraniumreducens Rf4 4357 5518 peripheral species Gibberella zeae Gibberella zeae Gibberella zeae Gibberella zeae 10685 251221 core species Gloeobacter violaceus Gloeobacter violaceus Gloeobacter violaceus PCC 7421 Gloeobacter violaceus 4430 272568 core species Gluconacetobacter diazotrophicus PAl 5 FAPERJ Gluconacetobacter diazotrophicus Gluconacetobacter diazotrophicus PAl 5 Gluconacetobacter diazotrophicus PAl 5 FAPERJ 3852 290633 core species Gluconobacter oxydans 621H Gluconobacter oxydans Gluconobacter oxydans 621H Gluconobacter oxydans 621H 2664 526226 core species Gordonia bronchialis DSM 43247 Gordonia bronchialis Gordonia bronchialis DSM 43247 Gordonia bronchialis DSM 43247 4696 411154 core species Gramella forsetii KT0803 Gramella forsetii Gramella forsetii KT0803 Gramella forsetii KT0803 3584 391165 core species Granulobacter bethesdensis CGDNIH1 Granulibacter bethesdensis Granulibacter bethesdensis CGDNIH1 Granulobacter bethesdensis CGDNIH1 2437 233412 peripheral species Haemophilus ducreyi 35000HP Haemophilus ducreyi Haemophilus ducreyi 35000HP Haemophilus ducreyi 35000HP 1717 71421 core species Haemophilus influenzae Haemophilus influenzae KW20 Haemophilus influenzae Rd KW20 Haemophilus influenzae 1657 281310 peripheral species Haemophilus influenzae 86 028NP Haemophilus influenzae 028NP Haemophilus influenzae 86-028NP Haemophilus influenzae 86 028NP 1792 374930 peripheral species Haemophilus influenzae PittEE Haemophilus influenzae PittEE Haemophilus influenzae PittEE Haemophilus influenzae PittEE 1613 374931 peripheral species Haemophilus influenzae PittGG Haemophilus influenzae PittGG Haemophilus influenzae PittGG Haemophilus influenzae PittGG 1661 557723 peripheral species Haemophilus parasuis SH0165 Haemophilus parasuis SH0165 Haemophilus parasuis SH0165 Haemophilus parasuis SH0165 2021 205914 peripheral species Haemophilus somnus 129PT Haemophilus somnus 129PT Haemophilus somnus 129PT Haemophilus somnus 129PT 1798 228400 peripheral species Haemophilus somnus 2336 Haemophilus somnus 2336 Haemophilus somnus 2336 Haemophilus somnus 2336 1980 349521 core species Hahella chejuensis KCTC 2396 Hahella chejuensis Hahella chejuensis KCTC 2396 Hahella chejuensis KCTC 2396 6778 502025 core species Haliangium ochraceum DSM 14365 Haliangium ochraceum Haliangium ochraceum DSM 14365 Haliangium ochraceum DSM 14365 6719 272569 core species Haloarcula marismortui ATCC 43049 Haloarcula marismortui Haloarcula marismortui ATCC 43049 Haloarcula marismortui ATCC 43049 4240 478009 peripheral species Halobacterium salinarum R1 Halobacterium salinarum Halobacterium salinarum R1 Halobacterium salinarum R1 2749 64091 core species Halobacterium sp Halobacterium sp. NRC1 Halobacterium sp. NRC-1 Halobacterium sp 2622 485914 core species Halomicrobium mukohataei DSM 12286 Halomicrobium mukohataei Halomicrobium mukohataei DSM 12286 Halomicrobium mukohataei DSM 12286 3349 362976 core species Haloquadratum walsbyi Haloquadratum walsbyi Haloquadratum walsbyi DSM 16790 Haloquadratum walsbyi 2646 519442 core species Halorhabdus utahensis DSM 12940 Halorhabdus utahensis Halorhabdus utahensis DSM 12940 Halorhabdus utahensis DSM 12940 2998 349124 core species Halorhodospira halophila SL1 Halorhodospira halophila Halorhodospira halophila SL1 Halorhodospira halophila SL1 2407 416348 core species Halorubrum lacusprofundi ATCC 49239 Halorubrum lacusprofundi Halorubrum lacusprofundi ATCC 49239 Halorubrum lacusprofundi ATCC 49239 3560 373903 core species Halothermothrix orenii H 168 Halothermothrix orenii Halothermothrix orenii H 168 Halothermothrix orenii H 168 2342 555778 core species Halothiobacillus neapolitanus c2 Halothiobacillus neapolitanus Halothiobacillus neapolitanus c2 Halothiobacillus neapolitanus c2 2357 382638 peripheral species Helicobacter acinonychis Sheeba Helicobacter acinonychis Helicobacter acinonychis str. Sheeba Helicobacter acinonychis Sheeba 1618 235279 peripheral species Helicobacter hepaticus Helicobacter hepaticus Helicobacter hepaticus ATCC 51449 Helicobacter hepaticus 1875 85962 core species Helicobacter pylori 26695 Helicobacter pylori 26695 Helicobacter pylori 26695 Helicobacter pylori 26695 1573 592205 peripheral species Helicobacter pylori B38 Helicobacter pylori B38 Helicobacter pylori B38 Helicobacter pylori B38 1382 563041 peripheral species Helicobacter pylori G27 Helicobacter pylori G27 Helicobacter pylori G27 Helicobacter pylori G27 1504 357544 peripheral species Helicobacter pylori HPAG1 Helicobacter pylori HPAG1 Helicobacter pylori HPAG1 Helicobacter pylori HPAG1 1540 85963 peripheral species Helicobacter pylori J99 Helicobacter pylori J99 Helicobacter pylori J99 Helicobacter pylori J99 1488 570508 peripheral species Helicobacter pylori P12 Helicobacter pylori P12 Helicobacter pylori P12 Helicobacter pylori P12 1578 512562 peripheral species Helicobacter pylori Shi470 Helicobacter pylori Shi470 Helicobacter pylori Shi470 Helicobacter pylori Shi470 1568 498761 core species Heliobacterium modesticaldum Ice1 Heliobacterium modesticaldum Heliobacterium modesticaldum Ice1 Heliobacterium modesticaldum Ice1 3000 204773 core species Herminiimonas arsenicoxydans Herminiimonas arsenicoxydans Herminiimonas arsenicoxydans Herminiimonas arsenicoxydans 3295 316274 core species Herpetosiphon aurantiacus ATCC 23779 Herpetosiphon aurantiacus Herpetosiphon aurantiacus ATCC 23779 Herpetosiphon aurantiacus ATCC 23779 5278 582402 core species Hirschia baltica ATCC 49814 Hirschia baltica Hirschia baltica ATCC 49814 Hirschia baltica ATCC 49814 3187 9606 core species Homo sapiens Homo sapiens Homo sapiens Homo sapiens 22523 380749 core species Hydrogenobaculum Y04AAS1 Hydrogenobaculum sp. Y04AAS1 Hydrogenobaculum sp. Y04AAS1 Hydrogenobaculum Y04AAS1 1629 415426 core species Hyperthermus butylicus Hyperthermus butylicus Hyperthermus butylicus DSM 5456 Hyperthermus butylicus 1602 228405 core species Hyphomonas neptunium ATCC 15444 Hyphomonas neptunium Hyphomonas neptunium ATCC 15444 Hyphomonas neptunium ATCC 15444 3505 283942 core species Idiomarina loihiensis L2TR Idiomarina loihiensis Idiomarina loihiensis L2TR Idiomarina loihiensis L2TR 2628 453591 core species Ignicoccus hospitalis KIN4 I Ignicoccus hospitalis Ignicoccus hospitalis KIN4/I Ignicoccus hospitalis KIN4 I 1434 6945 core species Ixodes scapularis Ixodes scapularis Ixodes scapularis Ixodes scapularis 20486 290400 core species Jannaschia CCS1 Jannaschia sp. CCS1 Jannaschia sp. CCS1 Jannaschia CCS1 4283 375286 core species Janthinobacterium Marseille Janthinobacterium sp. Marseille Janthinobacterium sp. Marseille Janthinobacterium Marseille 3697 471856 core species Jonesia denitrificans DSM 20603 Jonesia denitrificans Jonesia denitrificans DSM 20603 Jonesia denitrificans DSM 20603 2511 523791 core species Kangiella koreensis DSM 16069 Kangiella koreensis Kangiella koreensis DSM 16069 Kangiella koreensis DSM 16069 2632 266940 core species Kineococcus radiotolerans SRS30216 Kineococcus radiotolerans Kineococcus radiotolerans SRS30216 Kineococcus radiotolerans SRS30216 4681 507522 peripheral species Klebsiella pneumoniae 342 Klebsiella pneumoniae 342 Klebsiella pneumoniae 342 Klebsiella pneumoniae 342 5768 272620 core species Klebsiella pneumoniae MGH 78578 Klebsiella pneumoniae 78578 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Klebsiella pneumoniae MGH 78578 5185 484021 peripheral species Klebsiella pneumoniae NTUH K2044 Klebsiella pneumoniae K2044 Klebsiella pneumoniae NTUH-K2044 Klebsiella pneumoniae NTUH K2044 4992 28985 core species Kluyveromyces lactis Kluyveromyces lactis Kluyveromyces lactis Kluyveromyces lactis 5074 378753 core species Kocuria rhizophila DC2201 Kocuria rhizophila DC2201 Kocuria rhizophila DC2201 Kocuria rhizophila DC2201 2357 521045 core species Kosmotoga olearia TBF 19 5 1 Kosmotoga olearia Kosmotoga olearia TBF 19.5.1 Kosmotoga olearia TBF 19 5 1 2118 478801 core species Kytococcus sedentarius DSM 20547 Kytococcus sedentarius Kytococcus sedentarius DSM 20547 Kytococcus sedentarius DSM 20547 2554 29883 peripheral species Laccaria bicolor Laccaria bicolor Laccaria bicolor Laccaria bicolor 20614 559295 peripheral species Lachancea thermotolerans CBS 6340 Lachancea thermotolerans Lachancea thermotolerans CBS 6340 Lachancea thermotolerans CBS 6340 5091 272621 peripheral species Lactobacillus acidophilus NCFM Lactobacillus acidophilus Lactobacillus acidophilus NCFM Lactobacillus acidophilus NCFM 1862 387344 peripheral species Lactobacillus brevis ATCC 367 Lactobacillus brevis Lactobacillus brevis ATCC 367 Lactobacillus brevis ATCC 367 2218 543734 peripheral species Lactobacillus casei Lactobacillus casei BL23 Lactobacillus casei BL23 Lactobacillus casei 3022 321967 peripheral species Lactobacillus casei ATCC 334 Lactobacillus casei 334 Lactobacillus casei ATCC 334 Lactobacillus casei ATCC 334 2768 390333 peripheral species Lactobacillus delbrueckii bulgaricus Lactobacillus delbrueckii 11842 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 Lactobacillus delbrueckii bulgaricus 1529 321956 peripheral species Lactobacillus delbrueckii bulgaricus ATCC BAA-365 Lactobacillus delbrueckii BAA365 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Lactobacillus delbrueckii bulgaricus ATCC BAA-365 1715 334390 peripheral species Lactobacillus fermentum IFO 3956 Lactobacillus fermentum Lactobacillus fermentum IFO 3956 Lactobacillus fermentum IFO 3956 1843 324831 peripheral species Lactobacillus gasseri ATCC 33323 Lactobacillus gasseri Lactobacillus gasseri ATCC 33323 Lactobacillus gasseri ATCC 33323 1755 405566 peripheral species Lactobacillus helveticus DPC 4571 Lactobacillus helveticus Lactobacillus helveticus DPC 4571 Lactobacillus helveticus DPC 4571 1610 633699 peripheral species Lactobacillus johnsonii FI9785 Lactobacillus johnsonii FI9785 Lactobacillus johnsonii FI9785 Lactobacillus johnsonii FI9785 1733 257314 peripheral species Lactobacillus johnsonii NCC 533 Lactobacillus johnsonii 533 Lactobacillus johnsonii NCC 533 Lactobacillus johnsonii NCC 533 1821 220668 core species Lactobacillus plantarum Lactobacillus plantarum WCFS1 Lactobacillus plantarum WCFS1 Lactobacillus plantarum 3056 644042 peripheral species Lactobacillus plantarum JDM1 Lactobacillus plantarum JDM1 Lactobacillus plantarum JDM1 Lactobacillus plantarum JDM1 2948 557436 peripheral species Lactobacillus reuteri DSM 20016 Lactobacillus reuteri 20016 Lactobacillus reuteri DSM 20016 Lactobacillus reuteri DSM 20016 1900 557433 peripheral species Lactobacillus reuteri F275 Kitasato Lactobacillus reuteri 1112 Lactobacillus reuteri JCM 1112 Lactobacillus reuteri F275 Kitasato 1820 568703 peripheral species Lactobacillus rhamnosus GG Lactobacillus rhamnosus GG Lactobacillus rhamnosus GG Lactobacillus rhamnosus GG 2944 568704 peripheral species Lactobacillus rhamnosus Lc 705 Lactobacillus rhamnosus 705 Lactobacillus rhamnosus Lc 705 Lactobacillus rhamnosus Lc 705 2992 314315 peripheral species Lactobacillus sakei 23K Lactobacillus sakei Lactobacillus sakei subsp. sakei 23K Lactobacillus sakei 23K 1879 362948 peripheral species Lactobacillus salivarius UCC118 Lactobacillus salivarius Lactobacillus salivarius UCC118 Lactobacillus salivarius UCC118 2013 272623 core species Lactococcus lactis Lactococcus lactis Il1403 Lactococcus lactis subsp. lactis Il1403 Lactococcus lactis 2321 416870 peripheral species Lactococcus lactis cremoris MG1363 Lactococcus lactis MG1363 Lactococcus lactis subsp. cremoris MG1363 Lactococcus lactis cremoris MG1363 2434 272622 peripheral species Lactococcus lactis cremoris SK11 Lactococcus lactis SK11 Lactococcus lactis subsp. cremoris SK11 Lactococcus lactis cremoris SK11 2504 684738 peripheral species Lactococcus lactis KF147 Lactococcus lactis KF147 Lactococcus lactis subsp. lactis KF147 Lactococcus lactis KF147 2473 557598 core species Laribacter hongkongensis HLHK9 Laribacter hongkongensis Laribacter hongkongensis HLHK9 Laribacter hongkongensis HLHK9 3235 363253 core species Lawsonia intracellularis PHE MN1-00 Lawsonia intracellularis Lawsonia intracellularis PHE/MN1-00 Lawsonia intracellularis PHE MN1-00 1328 400673 peripheral species Legionella pneumophila Corby Legionella pneumophila Corby Legionella pneumophila str. Corby Legionella pneumophila Corby 3204 297245 peripheral species Legionella pneumophila Lens Legionella pneumophila Lens Legionella pneumophila str. Lens Legionella pneumophila Lens 2934 297246 core species Legionella pneumophila Paris Legionella pneumophila Paris Legionella pneumophila str. Paris Legionella pneumophila Paris 3166 272624 peripheral species Legionella pneumophila Philadelphia 1 Legionella pneumophila Philadelphia Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Legionella pneumophila Philadelphia 1 2942 281090 core species Leifsonia xyli xyli CTCB0 Leifsonia xyli Leifsonia xyli subsp. xyli str. CTCB07 Leifsonia xyli xyli CTCB0 2030 5671 core species Leishmania infantum Leishmania infantum Leishmania infantum Leishmania infantum 7916 355278 peripheral species Leptospira biflexa serovar Patoc Patoc 1 Ames Leptospira biflexa Ames Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' Leptospira biflexa serovar Patoc Patoc 1 Ames 3600 456481 peripheral species Leptospira biflexa serovar Patoc Patoc 1 Paris Leptospira biflexa Paris Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' Leptospira biflexa serovar Patoc Patoc 1 Paris 3726 355277 peripheral species Leptospira borgpetersenii serovar Hardjo-bovis JB197 Leptospira borgpetersenii JB197 Leptospira borgpetersenii serovar Hardjo-bovis JB197 Leptospira borgpetersenii serovar Hardjo-bovis JB197 2880 355276 peripheral species Leptospira borgpetersenii serovar Hardjo-bovis L550 Leptospira borgpetersenii L550 Leptospira borgpetersenii serovar Hardjo-bovis L550 Leptospira borgpetersenii serovar Hardjo-bovis L550 2945 267671 peripheral species Leptospira interrogans serovar Copenhageni Leptospira interrogans L1130 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 Leptospira interrogans serovar Copenhageni 3658 189518 core species Leptospira interrogans serovar Lai Leptospira interrogans 56601 Leptospira interrogans serovar Lai str. 56601 Leptospira interrogans serovar Lai 4724 395495 core species Leptothrix cholodnii SP 6 Leptothrix cholodnii Leptothrix cholodnii SP-6 Leptothrix cholodnii SP 6 4363 523794 core species Leptotrichia buccalis DSM 1135 Leptotrichia buccalis Leptotrichia buccalis C-1013-b Leptotrichia buccalis DSM 1135 2220 349519 peripheral species Leuconostoc citreum KM20 Leuconostoc citreum Leuconostoc citreum KM20 Leuconostoc citreum KM20 1820 203120 core species Leuconostoc mesenteroides ATCC 8293 Leuconostoc mesenteroides Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Leuconostoc mesenteroides ATCC 8293 2005 272626 core species Listeria innocua Listeria innocua Listeria innocua Clip11262 Listeria innocua 3043 169963 peripheral species Listeria monocytogenes Listeria monocytogenes EGD Listeria monocytogenes EGD-e Listeria monocytogenes 2846 265669 peripheral species Listeria monocytogenes 4b F2365 Listeria monocytogenes F2365 Listeria monocytogenes str. 4b F2365 Listeria monocytogenes 4b F2365 2821 634178 peripheral species Listeria monocytogenes Clip81459 Listeria monocytogenes 80459 Listeria monocytogenes Clip80459 Listeria monocytogenes Clip81459 2765 552536 peripheral species Listeria monocytogenes HCC23 Listeria monocytogenes HCC23 Listeria monocytogenes HCC23 Listeria monocytogenes HCC23 2974 386043 peripheral species Listeria welshimeri serovar 6b SLCC5334 Listeria welshimeri Listeria welshimeri serovar 6b str. SLCC5334 Listeria welshimeri serovar 6b SLCC5334 2774 36914 peripheral species Lodderomyces elongisporus Lodderomyces elongisporus Lodderomyces elongisporus Lodderomyces elongisporus 5779 444177 core species Lysinibacillus sphaericus C3 41 Lysinibacillus sphaericus Lysinibacillus sphaericus C3-41 Lysinibacillus sphaericus C3 41 4771 9544 peripheral species Macaca mulatta Macaca mulatta Macaca mulatta Macaca mulatta 21905 458233 core species Macrococcus caseolyticus JCSC5402 Macrococcus caseolyticus Macrococcus caseolyticus JCSC5402 Macrococcus caseolyticus JCSC5402 2052 148305 core species Magnaporthe grisea Magnaporthe grisea Magnaporthe grisea Magnaporthe grisea 12686 156889 core species Magnetococcus MC-1 Magnetococcus sp. MC1 Magnetococcus sp. MC-1 Magnetococcus MC-1 3716 342108 core species Magnetospirillum magneticum AMB-1 Magnetospirillum magneticum Magnetospirillum magneticum AMB-1 Magnetospirillum magneticum AMB-1 4559 221988 core species Mannheimia succiniciproducens MBEL55E Mannheimia succiniciproducens Mannheimia succiniciproducens MBEL55E Mannheimia succiniciproducens MBEL55E 2369 394221 core species Maricaulis maris MCS10 Maricaulis maris Maricaulis maris MCS10 Maricaulis maris MCS10 3063 351348 core species Marinobacter aquaeolei VT8 Marinobacter aquaeolei Marinobacter aquaeolei VT8 Marinobacter aquaeolei VT8 4272 400668 core species Marinomonas MWYL1 Marinomonas sp. MWYL1 Marinomonas sp. MWYL1 Marinomonas MWYL1 4439 265311 core species Mesoplasma florum L1 Mesoplasma florum Mesoplasma florum L1 Mesoplasma florum L1 682 266779 peripheral species Mesorhizobium BNC1 Chelativorans sp. BNC1 Chelativorans sp. BNC1 Mesorhizobium BNC1 4543 266835 core species Mesorhizobium loti Mesorhizobium loti Mesorhizobium loti MAFF303099 Mesorhizobium loti 7272 399549 core species Metallosphaera sedula DSM 5348 Metallosphaera sedula Metallosphaera sedula DSM 5348 Metallosphaera sedula DSM 5348 2256 187420 core species Methanobacterium thermoautotrophicum Methanothermobacter thermautotr. Methanothermobacter thermautotrophicus str. Delta H Methanobacterium thermoautotrophicum 1871 420247 core species Methanobrevibacter smithii ATCC 35061 Methanobrevibacter smithii Methanobrevibacter smithii ATCC 35061 Methanobrevibacter smithii ATCC 35061 1793 573064 peripheral species Methanocaldococcus fervens AG86 Methanocaldococcus fervens Methanocaldococcus fervens AG86 Methanocaldococcus fervens AG86 1581 579137 peripheral species Methanocaldococcus vulcanius M7 Methanocaldococcus vulcanius Methanocaldococcus vulcanius M7 Methanocaldococcus vulcanius M7 1742 304371 core species Methanocella paludicola SANAE Methanocella paludicola Methanocella paludicola SANAE Methanocella paludicola SANAE 3004 259564 core species Methanococcoides burtonii DSM 6242 Methanococcoides burtonii Methanococcoides burtonii DSM 6242 Methanococcoides burtonii DSM 6242 2273 419665 peripheral species Methanococcus aeolicus Nankai-3 Methanococcus aeolicus Methanococcus aeolicus Nankai-3 Methanococcus aeolicus Nankai-3 1490 243232 core species Methanococcus jannaschii Methanocaldococcus jannaschii Methanocaldococcus jannaschii DSM 2661 Methanococcus jannaschii 1786 402880 peripheral species Methanococcus maripaludis C5 Methanococcus maripaludis C5 Methanococcus maripaludis C5 Methanococcus maripaludis C5 1822 444158 peripheral species Methanococcus maripaludis C6 Methanococcus maripaludis C6 Methanococcus maripaludis C6 Methanococcus maripaludis C6 1826 426368 peripheral species Methanococcus maripaludis C7 Methanococcus maripaludis C7 Methanococcus maripaludis C7 Methanococcus maripaludis C7 1788 267377 core species Methanococcus maripaludis S2 Methanococcus maripaludis S2 Methanococcus maripaludis S2 Methanococcus maripaludis S2 1722 406327 peripheral species Methanococcus vannielii SB Methanococcus vannielii Methanococcus vannielii SB Methanococcus vannielii SB 1678 410358 core species Methanocorpusculum labreanum Z Methanocorpusculum labreanum Methanocorpusculum labreanum Z Methanocorpusculum labreanum Z 1739 368407 core species Methanoculleus marisnigri JR1 Methanoculleus marisnigri Methanoculleus marisnigri JR1 Methanoculleus marisnigri JR1 2489 190192 core species Methanopyrus kandleri Methanopyrus kandleri Methanopyrus kandleri AV19 Methanopyrus kandleri 1687 349307 core species Methanosaeta thermophila PT Methanosaeta thermophila Methanosaeta thermophila PT Methanosaeta thermophila PT 1696 188937 peripheral species Methanosarcina acetivorans Methanosarcina acetivorans Methanosarcina acetivorans C2A Methanosarcina acetivorans 4540 269797 peripheral species Methanosarcina barkeri fusaro Methanosarcina barkeri Methanosarcina barkeri str. Fusaro Methanosarcina barkeri fusaro 3624 192952 core species Methanosarcina mazei Methanosarcina mazei Methanosarcina mazei Go1 Methanosarcina mazei 3368 339860 core species Methanosphaera stadtmanae Methanosphaera stadtmanae Methanosphaera stadtmanae DSM 3091 Methanosphaera stadtmanae 1534 323259 core species Methanospirillum hungatei JF-1 Methanospirillum hungatei Methanospirillum hungatei JF-1 Methanospirillum hungatei JF-1 3139 481448 core species Methylacidiphilum infernorum V4 Methylacidiphilum infernorum Methylacidiphilum infernorum V4 Methylacidiphilum infernorum V4 2472 420662 core species Methylibium petroleiphilum PM1 Methylibium petroleiphilum Methylibium petroleiphilum PM1 Methylibium petroleiphilum PM1 4449 265072 core species Methylobacillus flagellatus KT Methylobacillus flagellatus Methylobacillus flagellatus KT Methylobacillus flagellatus KT 2753 426117 peripheral species Methylobacterium 4 46 Methylobacterium sp. 446 Methylobacterium sp. 4-46 Methylobacterium 4 46 6692 440085 peripheral species Methylobacterium chloromethanicum CM4 Methylobacterium chloromethanicum Methylobacterium chloromethanicum CM4 Methylobacterium chloromethanicum CM4 5516 272630 peripheral species Methylobacterium extorquens AM1 Methylobacterium extorquens AM1 Methylobacterium extorquens AM1 Methylobacterium extorquens AM1 6212 661410 peripheral species Methylobacterium extorquens DM4 Methylobacterium extorquens DM4 Methylobacterium extorquens DM4 Methylobacterium extorquens DM4 5736 419610 core species Methylobacterium extorquens PA1 Methylobacterium extorquens PA1 Methylobacterium extorquens PA1 Methylobacterium extorquens PA1 4829 460265 peripheral species Methylobacterium nodulans ORS 2060 Methylobacterium nodulans Methylobacterium nodulans ORS 2060 Methylobacterium nodulans ORS 2060 8308 441620 peripheral species Methylobacterium populi BJ001 Methylobacterium populi Methylobacterium populi BJ001 Methylobacterium populi BJ001 5365 426355 peripheral species Methylobacterium radiotolerans JCM 2831 Methylobacterium radiotolerans Methylobacterium radiotolerans JCM 2831 Methylobacterium radiotolerans JCM 2831 6431 395965 core species Methylocella silvestris BL2 Methylocella silvestris Methylocella silvestris BL2 Methylocella silvestris BL2 3818 243233 core species Methylococcus capsulatus Bath Methylococcus capsulatus Methylococcus capsulatus str. Bath Methylococcus capsulatus Bath 2956 583345 core species Methylotenera mobilis JLW8 Methylotenera mobilis Methylotenera mobilis JLW8 Methylotenera mobilis JLW8 2338 582744 core species Methylovorus SIP3 4 Methylovorus sp. SIP34 Methylovorus sp. SIP3-4 Methylovorus SIP3 4 2909 465515 core species Micrococcus luteus NCTC 2665 Micrococcus luteus Micrococcus luteus NCTC 2665 Micrococcus luteus NCTC 2665 2236 449447 core species Microcystis aeruginosa NIES 843 Microcystis aeruginosa Microcystis aeruginosa NIES-843 Microcystis aeruginosa NIES 843 6312 13616 core species Monodelphis domestica Monodelphis domestica Monodelphis domestica Monodelphis domestica 19466 81824 peripheral species Monosiga brevicollis Monosiga brevicollis Monosiga brevicollis Monosiga brevicollis 9196 264732 core species Moorella thermoacetica ATCC 39073 Moorella thermoacetica Moorella thermoacetica ATCC 39073 Moorella thermoacetica ATCC 39073 2463 10090 core species Mus musculus Mus musculus Mus musculus Mus musculus 23443 561007 peripheral species Mycobacterium abscessus ATCC 19977 Mycobacterium abscessus Mycobacterium abscessus ATCC 19977 Mycobacterium abscessus ATCC 19977 4941 243243 peripheral species Mycobacterium avium 104 Mycobacterium avium 104 Mycobacterium avium 104 Mycobacterium avium 104 5120 262316 peripheral species Mycobacterium avium paratuberculosis Mycobacterium avium K10 Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium avium paratuberculosis 4350 233413 peripheral species Mycobacterium bovis Mycobacterium bovis AF2122 Mycobacterium bovis AF2122/97 Mycobacterium bovis 3918 410289 peripheral species Mycobacterium bovis BCG Pasteur 1173P2 Mycobacterium bovis 1173P2 Mycobacterium bovis BCG str. Pasteur 1173P2 Mycobacterium bovis BCG Pasteur 1173P2 3949 561275 peripheral species Mycobacterium bovis BCG Tokyo 172 Mycobacterium bovis 172 Mycobacterium bovis BCG str. Tokyo 172 Mycobacterium bovis BCG Tokyo 172 3944 350054 peripheral species Mycobacterium gilvum PYR-GCK Mycobacterium gilvum PYR-GCK Mycobacterium gilvum PYR-GCK Mycobacterium gilvum PYR-GCK 5579 164757 peripheral species Mycobacterium JLS Mycobacterium sp. JLS Mycobacterium sp. JLS Mycobacterium JLS 5739 189918 peripheral species Mycobacterium KMS Mycobacterium sp. KMS Mycobacterium sp. KMS Mycobacterium KMS 5975 272631 peripheral species Mycobacterium leprae Mycobacterium leprae TN Mycobacterium leprae TN Mycobacterium leprae 1605 561304 peripheral species Mycobacterium leprae Br4923 Mycobacterium leprae Br4923 Mycobacterium leprae Br4923 Mycobacterium leprae Br4923 1602 216594 peripheral species Mycobacterium marinum M Mycobacterium marinum Mycobacterium marinum M Mycobacterium marinum M 5452 164756 peripheral species Mycobacterium MCS Mycobacterium sp. MCS Mycobacterium sp. MCS Mycobacterium MCS 5615 246196 peripheral species Mycobacterium smegmatis MC2 155 Mycobacterium smegmatis Mycobacterium smegmatis str. MC2 155 Mycobacterium smegmatis MC2 155 6716 83331 peripheral species Mycobacterium tuberculosis CDC1551 Mycobacterium tuberculosis CDC1551 Mycobacterium tuberculosis CDC1551 Mycobacterium tuberculosis CDC1551 4189 336982 peripheral species Mycobacterium tuberculosis F11 Mycobacterium tuberculosis F11 Mycobacterium tuberculosis F11 Mycobacterium tuberculosis F11 3941 419947 peripheral species Mycobacterium tuberculosis H37Ra Mycobacterium tuberculosis H37Ra Mycobacterium tuberculosis H37Ra Mycobacterium tuberculosis H37Ra 4034 83332 core species Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis H37Rv 3977 478434 peripheral species Mycobacterium tuberculosis KZN 1435 Mycobacterium tuberculosis 1435 Mycobacterium tuberculosis KZN 1435 Mycobacterium tuberculosis KZN 1435 4059 362242 peripheral species Mycobacterium ulcerans Agy99 Mycobacterium ulcerans Mycobacterium ulcerans Agy99 Mycobacterium ulcerans Agy99 4241 350058 peripheral species Mycobacterium vanbaalenii PYR-1 Mycobacterium vanbaalenii Mycobacterium vanbaalenii PYR-1 Mycobacterium vanbaalenii PYR-1 5979 347257 peripheral species Mycoplasma agalactiae PG2 Mycoplasma agalactiae Mycoplasma agalactiae PG2 Mycoplasma agalactiae PG2 742 243272 peripheral species Mycoplasma arthritidis 158L3 1 Mycoplasma arthritidis Mycoplasma arthritidis 158L3-1 Mycoplasma arthritidis 158L3 1 631 340047 peripheral species Mycoplasma capricolum ATCC 27343 Mycoplasma capricolum Mycoplasma capricolum subsp. capricolum ATCC 27343 Mycoplasma capricolum ATCC 27343 812 45361 peripheral species Mycoplasma conjunctivae Mycoplasma conjunctivae Mycoplasma conjunctivae Mycoplasma conjunctivae 691 233150 peripheral species Mycoplasma gallisepticum Mycoplasma gallisepticum Mycoplasma gallisepticum R Mycoplasma gallisepticum 726 243273 core species Mycoplasma genitalium Mycoplasma genitalium Mycoplasma genitalium G37 Mycoplasma genitalium 475 2098 peripheral species Mycoplasma hominis Mycoplasma hominis Mycoplasma hominis Mycoplasma hominis 523 295358 peripheral species Mycoplasma hyopneumoniae 232 Mycoplasma hyopneumoniae 232 Mycoplasma hyopneumoniae 232 Mycoplasma hyopneumoniae 232 691 262722 peripheral species Mycoplasma hyopneumoniae 7448 Mycoplasma hyopneumoniae 7448 Mycoplasma hyopneumoniae 7448 Mycoplasma hyopneumoniae 7448 657 262719 peripheral species Mycoplasma hyopneumoniae J Mycoplasma hyopneumoniae J Mycoplasma hyopneumoniae J Mycoplasma hyopneumoniae J 657 267748 peripheral species Mycoplasma mobile 163K Mycoplasma mobile Mycoplasma mobile 163K Mycoplasma mobile 163K 633 272632 peripheral species Mycoplasma mycoides Mycoplasma mycoides Mycoplasma mycoides subsp. mycoides SC str. PG1 Mycoplasma mycoides 1016 272633 peripheral species Mycoplasma penetrans Mycoplasma penetrans HF2 Mycoplasma penetrans HF-2 Mycoplasma penetrans 1037 272634 peripheral species Mycoplasma pneumoniae Mycoplasma pneumoniae Mycoplasma pneumoniae M129 Mycoplasma pneumoniae 689 272635 peripheral species Mycoplasma pulmonis Mycoplasma pulmonis Mycoplasma pulmonis UAB CTIP Mycoplasma pulmonis 779 262723 peripheral species Mycoplasma synoviae 53 Mycoplasma synoviae Mycoplasma synoviae 53 Mycoplasma synoviae 53 659 246197 core species Myxococcus xanthus DK 1622 Myxococcus xanthus Myxococcus xanthus DK 1622 Myxococcus xanthus DK 1622 7331 479431 core species Nakamurella multipartita DSM 44233 Nakamurella multipartita Nakamurella multipartita DSM 44233 Nakamurella multipartita DSM 44233 5240 228908 core species Nanoarchaeum equitans Nanoarchaeum equitans Nanoarchaeum equitans Kin4-M Nanoarchaeum equitans 536 457570 core species Natranaerobius thermophilus JW NM WN LF Natranaerobius thermophilus Natranaerobius thermophilus JW/NM-WN-LF Natranaerobius thermophilus JW NM WN LF 2906 348780 core species Natronomonas pharaonis Natronomonas pharaonis Natronomonas pharaonis DSM 2160 Natronomonas pharaonis 2820 598659 core species Nautilia profundicola AmH Nautilia profundicola Nautilia profundicola AmH Nautilia profundicola AmH 1730 242231 peripheral species Neisseria gonorrhoeae FA 1090 Neisseria gonorrhoeae 1090 Neisseria gonorrhoeae FA 1090 Neisseria gonorrhoeae FA 1090 2002 521006 peripheral species Neisseria gonorrhoeae NCCP11945 Neisseria gonorrhoeae 11945 Neisseria gonorrhoeae NCCP11945 Neisseria gonorrhoeae NCCP11945 2674 374833 peripheral species Neisseria meningitidis 053442 Neisseria meningitidis 053442 Neisseria meningitidis 053442 Neisseria meningitidis 053442 2020 662598 peripheral species Neisseria meningitidis alpha14 Neisseria meningitidis alpha14 Neisseria meningitidis alpha14 Neisseria meningitidis alpha14 1872 272831 peripheral species Neisseria meningitidis FAM18 Neisseria meningitidis FAM18 Neisseria meningitidis FAM18 Neisseria meningitidis FAM18 1917 122586 core species Neisseria meningitidis MC58 Neisseria meningitidis MC58 Neisseria meningitidis MC58 Neisseria meningitidis MC58 2063 122587 peripheral species Neisseria meningitidis Z2491 Neisseria meningitidis Z2491 Neisseria meningitidis Z2491 Neisseria meningitidis Z2491 1909 45351 peripheral species Nematostella vectensis Nematostella vectensis Nematostella vectensis Nematostella vectensis 27273 434131 peripheral species Neorickettsia risticii Illinois Neorickettsia risticii Neorickettsia risticii str. Illinois Neorickettsia risticii Illinois 892 222891 core species Neorickettsia sennetsu Miyayama Neorickettsia sennetsu Neorickettsia sennetsu str. Miyayama Neorickettsia sennetsu Miyayama 932 36630 core species Neosartorya fischeri Neosartorya fischeri Neosartorya fischeri Neosartorya fischeri 10406 5141 core species Neurospora crassa Neurospora crassa Neurospora crassa Neurospora crassa 10081 387092 core species Nitratiruptor SB155-2 Nitratiruptor sp. SB155 Nitratiruptor sp. SB155-2 Nitratiruptor SB155-2 1843 323097 peripheral species Nitrobacter hamburgensis X14 Nitrobacter hamburgensis Nitrobacter hamburgensis X14 Nitrobacter hamburgensis X14 4326 323098 core species Nitrobacter winogradskyi Nb-255 Nitrobacter winogradskyi Nitrobacter winogradskyi Nb-255 Nitrobacter winogradskyi Nb-255 3122 323261 core species Nitrosococcus oceani ATCC 19707 Nitrosococcus oceani Nitrosococcus oceani ATCC 19707 Nitrosococcus oceani ATCC 19707 3017 228410 core species Nitrosomonas europaea Nitrosomonas europaea Nitrosomonas europaea ATCC 19718 Nitrosomonas europaea 2461 335283 peripheral species Nitrosomonas eutropha C71 Nitrosomonas eutropha Nitrosomonas eutropha C91 Nitrosomonas eutropha C71 2551 436308 core species Nitrosopumilus maritimus SCM1 Nitrosopumilus maritimus Nitrosopumilus maritimus SCM1 Nitrosopumilus maritimus SCM1 1795 323848 core species Nitrosospira multiformis ATCC 25196 Nitrosospira multiformis Nitrosospira multiformis ATCC 25196 Nitrosospira multiformis ATCC 25196 2805 247156 core species Nocardia farcinica IFM10152 Nocardia farcinica Nocardia farcinica IFM 10152 Nocardia farcinica IFM10152 5936 196162 core species Nocardioides JS614 Nocardioides sp. JS614 Nocardioides sp. JS614 Nocardioides JS614 4909 63737 peripheral species Nostoc punctiforme PCC 73102 Nostoc punctiforme Nostoc punctiforme PCC 73102 Nostoc punctiforme PCC 73102 6689 103690 core species Nostoc sp Nostoc sp. PCC7120 Nostoc sp. PCC 7120 Nostoc sp 6129 279238 core species Novosphingobium aromaticivorans DSM 12444 Novosphingobium aromaticivorans Novosphingobium aromaticivorans DSM 12444 Novosphingobium aromaticivorans DSM 12444 3937 221109 core species Oceanobacillus iheyensis Oceanobacillus iheyensis Oceanobacillus iheyensis HTE831 Oceanobacillus iheyensis 3500 439375 core species Ochrobactrum anthropi ATCC 49188 Ochrobactrum anthropi Ochrobactrum anthropi ATCC 49188 Ochrobactrum anthropi ATCC 49188 4799 203123 core species Oenococcus oeni PSU-1 Oenococcus oeni Oenococcus oeni PSU-1 Oenococcus oeni PSU-1 1691 504832 core species Oligotropha carboxidovorans OM5 Oligotropha carboxidovorans Oligotropha carboxidovorans OM5 Oligotropha carboxidovorans OM5 3722 262768 core species Onion yellows phytoplasma Phytoplasma sp. OYM Onion yellows phytoplasma OY-M Onion yellows phytoplasma 750 452637 core species Opitutus terrae PB90 1 Opitutus terrae Opitutus terrae PB90-1 Opitutus terrae PB90 1 4612 357244 core species Orientia tsutsugamushi Boryong Orientia tsutsugamushi Boryong Orientia tsutsugamushi str. Boryong Orientia tsutsugamushi Boryong 1182 334380 peripheral species Orientia tsutsugamushi Ikeda Orientia tsutsugamushi Ikeda Orientia tsutsugamushi str. Ikeda Orientia tsutsugamushi Ikeda 1967 9258 core species Ornithorhynchus anatinus Ornithorhynchus anatinus Ornithorhynchus anatinus Ornithorhynchus anatinus 17951 9986 peripheral species Oryctolagus cuniculus Oryctolagus cuniculus Oryctolagus cuniculus Oryctolagus cuniculus 19124 39946 peripheral species Oryza indica Oryza sativa Indica Oryza sativa Indica Group Oryza indica 38861 39947 core species Oryza sativa Oryza sativa Japonica Oryza sativa Japonica Group Oryza sativa 58058 8090 peripheral species Oryzias latipes Oryzias latipes Oryzias latipes Oryzias latipes 19686 436017 peripheral species Ostreococcus lucimarinus CCE9901 Ostreococcus lucimarinus Ostreococcus lucimarinus CCE9901 Ostreococcus lucimarinus CCE9901 7403 324057 core species Paenibacillus JDR 2 Paenibacillus sp. JDR2 Paenibacillus sp. JDR-2 Paenibacillus JDR 2 6213 9598 peripheral species Pan troglodytes Pan troglodytes Pan troglodytes Pan troglodytes 19829 435591 core species Parabacteroides distasonis ATCC 8503 Parabacteroides distasonis Parabacteroides distasonis ATCC 8503 Parabacteroides distasonis ATCC 8503 3850 264201 core species Parachlamydia sp UWE25 Protochlamydia amoebophila Candidatus Protochlamydia amoebophila UWE25 Parachlamydia sp UWE25 2031 318586 core species Paracoccus denitrificans PD1222 Paracoccus denitrificans Paracoccus denitrificans PD1222 Paracoccus denitrificans PD1222 5077 402881 core species Parvibaculum lavamentivorans DS-1 Parvibaculum lavamentivorans Parvibaculum lavamentivorans DS-1 Parvibaculum lavamentivorans DS-1 3636 272843 core species Pasteurella multocida Pasteurella multocida Pasteurella multocida subsp. multocida str. Pm70 Pasteurella multocida 2015 561230 peripheral species Pectobacterium carotovorum PC1 Pectobacterium carotovorum Pectobacterium carotovorum subsp. carotovorum PC1 Pectobacterium carotovorum PC1 4246 561231 peripheral species Pectobacterium wasabiae WPP163 Pectobacterium wasabiae Pectobacterium wasabiae WPP163 Pectobacterium wasabiae WPP163 4437 278197 core species Pediococcus pentosaceus ATCC 25745 Pediococcus pentosaceus Pediococcus pentosaceus ATCC 25745 Pediococcus pentosaceus ATCC 25745 1755 485917 core species Pedobacter heparinus DSM 2366 Pedobacter heparinus Pedobacter heparinus DSM 2366 Pedobacter heparinus DSM 2366 4252 338963 core species Pelobacter carbinolicus Pelobacter carbinolicus Pelobacter carbinolicus DSM 2380 Pelobacter carbinolicus 3352 338966 peripheral species Pelobacter propionicus DSM 2379 Pelobacter propionicus Pelobacter propionicus DSM 2379 Pelobacter propionicus DSM 2379 3804 324925 core species Pelodictyon phaeoclathratiforme BU 1 Pelodictyon phaeoclathratiforme Pelodictyon phaeoclathratiforme BU-1 Pelodictyon phaeoclathratiforme BU 1 2707 370438 core species Pelotomaculum thermopropionicum SI Pelotomaculum thermopropionicum Pelotomaculum thermopropionicum SI Pelotomaculum thermopropionicum SI 2918 500485 peripheral species Penicillium chrysogenum Wisconsin 54-1255 Penicillium chrysogenum Penicillium chrysogenum Wisconsin 54-1255 Penicillium chrysogenum Wisconsin 54-1255 12773 123214 core species Persephonella marina EX H1 Persephonella marina Persephonella marina EX-H1 Persephonella marina EX H1 2051 403833 core species Petrotoga mobilis SJ95 Petrotoga mobilis Petrotoga mobilis SJ95 Petrotoga mobilis SJ95 1898 2850 peripheral species Phaeodactylum tricornutum Phaeodactylum tricornutum Phaeodactylum tricornutum Phaeodactylum tricornutum 10402 5306 peripheral species Phanerochaete chrysosporium Phanerochaete chrysosporium Phanerochaete chrysosporium Phanerochaete chrysosporium 11777 450851 core species Phenylobacterium zucineum HLK1 Phenylobacterium zucineum Phenylobacterium zucineum HLK1 Phenylobacterium zucineum HLK1 3854 298386 core species Photobacterium profundum SS9 Photobacterium profundum Photobacterium profundum SS9 Photobacterium profundum SS9 5488 291112 peripheral species Photorhabdus asymbiotica Photorhabdus asymbiotica Photorhabdus asymbiotica Photorhabdus asymbiotica 4395 243265 core species Photorhabdus luminescens Photorhabdus luminescens Photorhabdus luminescens subsp. laumondii TTO1 Photorhabdus luminescens 4683 3218 core species Physcomitrella patens Physcomitrella patens Physcomitrella patens Physcomitrella patens 35938 164328 peripheral species Phytophthora ramorum Phytophthora ramorum Phytophthora ramorum Phytophthora ramorum 15743 67593 peripheral species Phytophthora sojae Phytophthora sojae Phytophthora sojae Phytophthora sojae 19027 4929 peripheral species Pichia guilliermondii Pichia guilliermondii Pichia guilliermondii Pichia guilliermondii 5919 644223 peripheral species Pichia pastoris GS115 Pichia pastoris Pichia pastoris GS115 Pichia pastoris GS115 5040 4924 core species Pichia stipitis Pichia stipitis Pichia stipitis Pichia stipitis 5481 263820 core species Picrophilus torridus DSM 9790 Picrophilus torridus Picrophilus torridus DSM 9790 Picrophilus torridus DSM 9790 1535 243090 core species Pirellula sp Rhodopirellula baltica Rhodopirellula baltica SH 1 Pirellula sp 7325 5833 core species Plasmodium falciparum Plasmodium falciparum Plasmodium falciparum Plasmodium falciparum 5566 5850 peripheral species Plasmodium knowlesi Plasmodium knowlesi Plasmodium knowlesi Plasmodium knowlesi 5102 5855 peripheral species Plasmodium vivax Plasmodium vivax Plasmodium vivax Plasmodium vivax 5050 73239 peripheral species Plasmodium yoelii yoelii Plasmodium yoelii Plasmodium yoelii yoelii Plasmodium yoelii yoelii 7758 296591 core species Polaromonas JS666 Polaromonas sp. JS666 Polaromonas sp. JS666 Polaromonas JS666 5453 365044 peripheral species Polaromonas naphthalenivorans CJ2 Polaromonas naphthalenivorans Polaromonas naphthalenivorans CJ2 Polaromonas naphthalenivorans CJ2 4929 312153 core species Polynucleobacter necessarius asymbioticus QLW P1DMWA 1 Polynucleobacter necessarius QLW Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 Polynucleobacter necessarius asymbioticus QLW P1DMWA 1 2077 452638 peripheral species Polynucleobacter necessarius STIR1 Polynucleobacter necessarius STIR1 Polynucleobacter necessarius subsp. necessarius STIR1 Polynucleobacter necessarius STIR1 1508 9600 peripheral species Pongo pygmaeus Pongo pygmaeus Pongo pygmaeus Pongo pygmaeus 20068 3694 peripheral species Populus trichocarpa Populus trichocarpa Populus trichocarpa Populus trichocarpa 45550 431947 peripheral species Porphyromonas gingivalis ATCC 33277 Porphyromonas gingivalis 33277 Porphyromonas gingivalis ATCC 33277 Porphyromonas gingivalis ATCC 33277 2090 242619 core species Porphyromonas gingivalis W83 Porphyromonas gingivalis W83 Porphyromonas gingivalis W83 Porphyromonas gingivalis W83 1909 104341 peripheral species Postia placenta MAD 698 Postia placenta Postia placenta Postia placenta MAD 698 17173 146891 peripheral species Prochlorococcus marinus AS9601 Prochlorococcus marinus AS9601 Prochlorococcus marinus str. AS9601 Prochlorococcus marinus AS9601 1920 167539 peripheral species Prochlorococcus marinus CCMP1375 Prochlorococcus marinus CCMP1375 Prochlorococcus marinus subsp. marinus str. CCMP1375 Prochlorococcus marinus CCMP1375 1883 59919 peripheral species Prochlorococcus marinus MED4 Prochlorococcus marinus CCMP1986 Prochlorococcus marinus subsp. pastoris str. CCMP1986 Prochlorococcus marinus MED4 1717 93059 peripheral species Prochlorococcus marinus MIT 9211 Prochlorococcus marinus MIT9211 Prochlorococcus marinus str. MIT 9211 Prochlorococcus marinus MIT 9211 1853 93060 peripheral species Prochlorococcus marinus MIT 9215 Prochlorococcus marinus MIT9215 Prochlorococcus marinus str. MIT 9215 Prochlorococcus marinus MIT 9215 1982 167546 peripheral species Prochlorococcus marinus MIT 9301 Prochlorococcus marinus MIT9301 Prochlorococcus marinus str. MIT 9301 Prochlorococcus marinus MIT 9301 1906 59922 peripheral species Prochlorococcus marinus MIT 9303 Prochlorococcus marinus MIT9303 Prochlorococcus marinus str. MIT 9303 Prochlorococcus marinus MIT 9303 2997 74546 peripheral species Prochlorococcus marinus MIT 9312 Prochlorococcus marinus MIT9312 Prochlorococcus marinus str. MIT 9312 Prochlorococcus marinus MIT 9312 1810 167542 peripheral species Prochlorococcus marinus MIT 9515 Prochlorococcus marinus MIT9515 Prochlorococcus marinus str. MIT 9515 Prochlorococcus marinus MIT 9515 1905 74547 core species Prochlorococcus marinus MIT9313 Prochlorococcus marinus MIT9313 Prochlorococcus marinus str. MIT 9313 Prochlorococcus marinus MIT9313 2269 167555 peripheral species Prochlorococcus marinus NATL1A Prochlorococcus marinus NATL1A Prochlorococcus marinus str. NATL1A Prochlorococcus marinus NATL1A 2193 59920 peripheral species Prochlorococcus marinus NATL2A Prochlorococcus marinus NATL2A Prochlorococcus marinus str. NATL2A Prochlorococcus marinus NATL2A 2162 267747 core species Propionibacterium acnes KPA171202 Propionibacterium acnes Propionibacterium acnes KPA171202 Propionibacterium acnes KPA171202 2297 290512 peripheral species Prosthecochloris aestuarii DSM 271 Prosthecochloris aestuarii Prosthecochloris aestuarii DSM 271 Prosthecochloris aestuarii DSM 271 2327 290318 core species Prosthecochloris vibrioformis DSM 265 Chlorobium phaeovibrioides Chlorobium phaeovibrioides DSM 265 Prosthecochloris vibrioformis DSM 265 1753 529507 core species Proteus mirabilis Proteus mirabilis Proteus mirabilis HI4320 Proteus mirabilis 3662 342610 peripheral species Pseudoalteromonas atlantica T6c Pseudoalteromonas atlantica Pseudoalteromonas atlantica T6c Pseudoalteromonas atlantica T6c 4281 326442 core species Pseudoalteromonas haloplanktis TAC125 Pseudoalteromonas haloplanktis Pseudoalteromonas haloplanktis TAC125 Pseudoalteromonas haloplanktis TAC125 3485 208964 core species Pseudomonas aeruginosa Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa 5566 557722 peripheral species Pseudomonas aeruginosa LESB58 Pseudomonas aeruginosa LESB58 Pseudomonas aeruginosa LESB58 Pseudomonas aeruginosa LESB58 5925 381754 peripheral species Pseudomonas aeruginosa PA7 Pseudomonas aeruginosa PA7 Pseudomonas aeruginosa PA7 Pseudomonas aeruginosa PA7 6286 208963 peripheral species Pseudomonas aeruginosa UCBPP-PA14 Pseudomonas aeruginosa PA14 Pseudomonas aeruginosa UCBPP-PA14 Pseudomonas aeruginosa UCBPP-PA14 5892 384676 peripheral species Pseudomonas entomophila L48 Pseudomonas entomophila Pseudomonas entomophila L48 Pseudomonas entomophila L48 5134 220664 peripheral species Pseudomonas fluorescens Pf-5 Pseudomonas fluorescens Pf5 Pseudomonas fluorescens Pf-5 Pseudomonas fluorescens Pf-5 6138 205922 peripheral species Pseudomonas fluorescens Pf0 1 Pseudomonas fluorescens Pf01 Pseudomonas fluorescens Pf0-1 Pseudomonas fluorescens Pf0 1 5722 216595 peripheral species Pseudomonas fluorescens SBW25 Pseudomonas fluorescens SBW25 Pseudomonas fluorescens SBW25 Pseudomonas fluorescens SBW25 6393 399739 peripheral species Pseudomonas mendocina ymp Pseudomonas mendocina Pseudomonas mendocina ymp Pseudomonas mendocina ymp 4594 351746 peripheral species Pseudomonas putida F1 Pseudomonas putida F1 Pseudomonas putida F1 Pseudomonas putida F1 5250 76869 peripheral species Pseudomonas putida GB 1 Pseudomonas putida GB1 Pseudomonas putida GB-1 Pseudomonas putida GB 1 5408 160488 peripheral species Pseudomonas putida KT2440 Pseudomonas putida KT2440 Pseudomonas putida KT2440 Pseudomonas putida KT2440 5350 390235 peripheral species Pseudomonas putida W619 Pseudomonas putida W619 Pseudomonas putida W619 Pseudomonas putida W619 5182 379731 peripheral species Pseudomonas stutzeri A1501 Pseudomonas stutzeri Pseudomonas stutzeri A1501 Pseudomonas stutzeri A1501 4128 264730 peripheral species Pseudomonas syringae phaseolicola 1448A Pseudomonas syringae 1448A Pseudomonas syringae pv. phaseolicola 1448A Pseudomonas syringae phaseolicola 1448A 5172 205918 peripheral species Pseudomonas syringae pv B728a Pseudomonas syringae B728a Pseudomonas syringae pv. syringae B728a Pseudomonas syringae pv B728a 5089 223283 peripheral species Pseudomonas syringae tomato DC3000 Pseudomonas syringae DC3000 Pseudomonas syringae pv. tomato str. DC3000 Pseudomonas syringae tomato DC3000 5613 259536 core species Psychrobacter arcticum 273-4 Psychrobacter arcticus Psychrobacter arcticus 273-4 Psychrobacter arcticum 273-4 2120 335284 peripheral species Psychrobacter cryohalolentis K5 Psychrobacter cryohalolentis Psychrobacter cryohalolentis K5 Psychrobacter cryohalolentis K5 2511 349106 peripheral species Psychrobacter PRwf-1 Psychrobacter sp. PRwf Psychrobacter sp. PRwf-1 Psychrobacter PRwf-1 2385 357804 core species Psychromonas ingrahamii 37 Psychromonas ingrahamii Psychromonas ingrahamii 37 Psychromonas ingrahamii 37 3545 178306 core species Pyrobaculum aerophilum Pyrobaculum aerophilum Pyrobaculum aerophilum str. IM2 Pyrobaculum aerophilum 2603 340102 peripheral species Pyrobaculum arsenaticum DSM 13514 Pyrobaculum arsenaticum Pyrobaculum arsenaticum DSM 13514 Pyrobaculum arsenaticum DSM 13514 2299 410359 peripheral species Pyrobaculum calidifontis JCM 11548 Pyrobaculum calidifontis Pyrobaculum calidifontis JCM 11548 Pyrobaculum calidifontis JCM 11548 2149 384616 peripheral species Pyrobaculum islandicum DSM 4184 Pyrobaculum islandicum Pyrobaculum islandicum DSM 4184 Pyrobaculum islandicum DSM 4184 1978 272844 peripheral species Pyrococcus abyssi Pyrococcus abyssi Pyrococcus abyssi GE5 Pyrococcus abyssi 1782 186497 peripheral species Pyrococcus furiosus Pyrococcus furiosus Pyrococcus furiosus DSM 3638 Pyrococcus furiosus 2125 70601 core species Pyrococcus horikoshii Pyrococcus horikoshii Pyrococcus horikoshii OT3 Pyrococcus horikoshii 1955 381666 peripheral species Ralstonia eutropha H16 Ralstonia eutropha H16 Ralstonia eutropha H16 Ralstonia eutropha H16 6624 264198 peripheral species Ralstonia eutropha JMP134 Ralstonia eutropha JMP134 Ralstonia eutropha JMP134 Ralstonia eutropha JMP134 6446 266264 peripheral species Ralstonia metallidurans CH34 Ralstonia metallidurans Ralstonia metallidurans CH34 Ralstonia metallidurans CH34 6319 428406 peripheral species Ralstonia pickettii 12D Ralstonia pickettii 12D Ralstonia pickettii 12D Ralstonia pickettii 12D 5361 402626 peripheral species Ralstonia pickettii 12J Ralstonia pickettii 12J Ralstonia pickettii 12J Ralstonia pickettii 12J 4952 267608 core species Ralstonia solanacearum Ralstonia solanacearum Ralstonia solanacearum GMI1000 Ralstonia solanacearum 5108 10116 peripheral species Rattus norvegicus Rattus norvegicus Rattus norvegicus Rattus norvegicus 22938 288705 core species Renibacterium salmoninarum ATCC 33209 Renibacterium salmoninarum Renibacterium salmoninarum ATCC 33209 Renibacterium salmoninarum ATCC 33209 3507 347834 core species Rhizobium etli CFN 42 Rhizobium etli CFN42 Rhizobium etli CFN 42 Rhizobium etli CFN 42 5963 491916 peripheral species Rhizobium etli CIAT 652 Rhizobium etli CIAT652 Rhizobium etli CIAT 652 Rhizobium etli CIAT 652 6056 395491 peripheral species Rhizobium leguminosarum bv trifolii WSM1325 Rhizobium leguminosarum WSM1325 Rhizobium leguminosarum bv. trifolii WSM1325 Rhizobium leguminosarum bv trifolii WSM1325 7001 395492 peripheral species Rhizobium leguminosarum bv trifolii WSM2304 Rhizobium leguminosarum WSM2304 Rhizobium leguminosarum bv. trifolii WSM2304 Rhizobium leguminosarum bv trifolii WSM2304 6415 216596 peripheral species Rhizobium leguminosarum bv viciae 3841 Rhizobium leguminosarum 3841 Rhizobium leguminosarum bv. viciae 3841 Rhizobium leguminosarum bv viciae 3841 7139 394 peripheral species Rhizobium NGR234 Rhizobium sp. NGR234 Rhizobium sp. NGR234 Rhizobium NGR234 6363 272943 core species Rhodobacter sphaeroides 2 4 1 Rhodobacter sphaeroides 241 Rhodobacter sphaeroides 2.4.1 Rhodobacter sphaeroides 2 4 1 4242 349102 peripheral species Rhodobacter sphaeroides ATCC 17025 Rhodobacter sphaeroides 17025 Rhodobacter sphaeroides ATCC 17025 Rhodobacter sphaeroides ATCC 17025 4333 349101 peripheral species Rhodobacter sphaeroides ATCC 17029 Rhodobacter sphaeroides 17029 Rhodobacter sphaeroides ATCC 17029 Rhodobacter sphaeroides ATCC 17029 4131 557760 peripheral species Rhodobacter sphaeroides KD131 Rhodobacter sphaeroides KD131 Rhodobacter sphaeroides KD131 Rhodobacter sphaeroides KD131 4569 234621 peripheral species Rhodococcus erythropolis PR4 Rhodococcus erythropolis Rhodococcus erythropolis PR4 Rhodococcus erythropolis PR4 6433 101510 core species Rhodococcus jostii RHA1 Rhodococcus jostii Rhodococcus jostii RHA1 Rhodococcus jostii RHA1 9145 632772 peripheral species Rhodococcus opacus B4 Rhodococcus opacus Rhodococcus opacus B4 Rhodococcus opacus B4 7246 338969 core species Rhodoferax ferrireducens T118 Rhodoferax ferrireducens Rhodoferax ferrireducens T118 Rhodoferax ferrireducens T118 4418 316055 peripheral species Rhodopseudomonas palustris BisA53 Rhodopseudomonas palustris BisA53 Rhodopseudomonas palustris BisA53 Rhodopseudomonas palustris BisA53 4878 316056 peripheral species Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisB18 4886 316057 peripheral species Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris BisB5 4397 258594 core species Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris CGA9 Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris CGA009 4820 316058 peripheral species Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris HaA2 4683 395960 peripheral species Rhodopseudomonas palustris TIE 1 Rhodopseudomonas palustris TIE1 Rhodopseudomonas palustris TIE-1 Rhodopseudomonas palustris TIE 1 5246 414684 peripheral species Rhodospirillum centenum SW Rhodospirillum centenum Rhodospirillum centenum SW Rhodospirillum centenum SW 4002 269796 core species Rhodospirillum rubrum ATCC 11170 Rhodospirillum rubrum Rhodospirillum rubrum ATCC 11170 Rhodospirillum rubrum ATCC 11170 3841 518766 core species Rhodothermus marinus DSM 4252 Rhodothermus marinus Rhodothermus marinus DSM 4252 Rhodothermus marinus DSM 4252 2863 347255 peripheral species Rickettsia africae ESF 5 Rickettsia africae Rickettsia africae ESF-5 Rickettsia africae ESF 5 1041 293614 peripheral species Rickettsia akari Hartford Rickettsia akari Rickettsia akari str. Hartford Rickettsia akari Hartford 1258 391896 peripheral species Rickettsia bellii OSU 85-389 Rickettsia bellii 85389 Rickettsia bellii OSU 85-389 Rickettsia bellii OSU 85-389 1475 336407 peripheral species Rickettsia bellii RML369-C Rickettsia bellii RML369 Rickettsia bellii RML369-C Rickettsia bellii RML369-C 1429 293613 peripheral species Rickettsia canadensis McKiel Rickettsia canadensis Rickettsia canadensis str. McKiel Rickettsia canadensis McKiel 1090 272944 peripheral species Rickettsia conorii Rickettsia conorii Rickettsia conorii str. Malish 7 Rickettsia conorii 1374 315456 peripheral species Rickettsia felis URRWXCal2 Rickettsia felis Rickettsia felis URRWXCal2 Rickettsia felis URRWXCal2 1512 416276 peripheral species Rickettsia massiliae MTU5 Rickettsia massiliae Rickettsia massiliae MTU5 Rickettsia massiliae MTU5 980 562019 peripheral species Rickettsia peacockii Rustic Rickettsia peacockii Rickettsia peacockii str. Rustic Rickettsia peacockii Rustic 947 272947 core species Rickettsia prowazekii Rickettsia prowazekii Rickettsia prowazekii str. Madrid E Rickettsia prowazekii 835 452659 peripheral species Rickettsia rickettsii Iowa Rickettsia rickettsii Iowa Rickettsia rickettsii str. Iowa Rickettsia rickettsii Iowa 1383 392021 peripheral species Rickettsia rickettsii Sheila Smith Rickettsia rickettsii Smith Rickettsia rickettsii str. 'Sheila Smith' Rickettsia rickettsii Sheila Smith 1343 257363 peripheral species Rickettsia typhi wilmington Rickettsia typhi Rickettsia typhi str. Wilmington Rickettsia typhi wilmington 838 313596 core species Robiginitalea biformata HTCC2501 Robiginitalea biformata Robiginitalea biformata HTCC2501 Robiginitalea biformata HTCC2501 3209 383372 core species Roseiflexus castenholzii DSM 13941 Roseiflexus castenholzii Roseiflexus castenholzii DSM 13941 Roseiflexus castenholzii DSM 13941 4330 357808 peripheral species Roseiflexus RS-1 Roseiflexus sp. RS1 Roseiflexus sp. RS-1 Roseiflexus RS-1 4517 375451 core species Roseobacter denitrificans OCh 114 Roseobacter denitrificans Roseobacter denitrificans OCh 114 Roseobacter denitrificans OCh 114 4129 680646 core species Rothia mucilaginosa Rothia mucilaginosa Rothia mucilaginosa DY-18 Rothia mucilaginosa 1905 266117 core species Rubrobacter xylanophilus DSM 9941 Rubrobacter xylanophilus Rubrobacter xylanophilus DSM 9941 Rubrobacter xylanophilus DSM 9941 3140 246200 core species Ruegeria pomeroyi DSS 3 Ruegeria pomeroyi Ruegeria pomeroyi DSS-3 Ruegeria pomeroyi DSS 3 4252 471857 core species Saccharomonospora viridis DSM 43017 Saccharomonospora viridis Saccharomonospora viridis DSM 43017 Saccharomonospora viridis DSM 43017 3828 4932 core species Saccharomyces cerevisiae Saccharomyces cerevisiae Saccharomyces cerevisiae Saccharomyces cerevisiae 6696 203122 core species Saccharophagus degradans 2-40 Saccharophagus degradans Saccharophagus degradans 2-40 Saccharophagus degradans 2-40 4007 405948 core species Saccharopolyspora erythraea NRRL 2338 Saccharopolyspora erythraea Saccharopolyspora erythraea NRRL 2338 Saccharopolyspora erythraea NRRL 2338 7197 309807 core species Salinibacter ruber DSM 13855 Salinibacter ruber Salinibacter ruber DSM 13855 Salinibacter ruber DSM 13855 2833 391037 peripheral species Salinispora arenicola CNS-205 Salinispora arenicola Salinispora arenicola CNS-205 Salinispora arenicola CNS-205 4917 369723 core species Salinispora tropica CNB-440 Salinispora tropica Salinispora tropica CNB-440 Salinispora tropica CNB-440 4536 41514 peripheral species Salmonella enterica arizonae serovar 62 z4 z23 Salmonella enterica Arizonae "Salmonella enterica subsp. arizonae serovar 62:z4,z23:--" Salmonella enterica arizonae serovar 62 z4 z23 4498 321314 peripheral species Salmonella enterica Choleraesuis Salmonella enterica Choleraesuis Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 Salmonella enterica Choleraesuis 4630 295319 peripheral species Salmonella enterica Paratypi ATCC 9150 Salmonella enterica Paratyphi Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Salmonella enterica Paratypi ATCC 9150 4092 454166 peripheral species Salmonella enterica serovar Agona SL483 Salmonella enterica Agona Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica serovar Agona SL483 4614 439851 peripheral species Salmonella enterica serovar Dublin CT 02021853 Salmonella enterica Dublin Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Salmonella enterica serovar Dublin CT 02021853 4617 550537 peripheral species Salmonella enterica serovar Enteritidis P125109 Salmonella enterica Enteritidis Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 Salmonella enterica serovar Enteritidis P125109 4206 550538 peripheral species Salmonella enterica serovar Gallinarum 287 91 Salmonella enterica Gallinarium Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 Salmonella enterica serovar Gallinarum 287 91 3965 454169 peripheral species Salmonella enterica serovar Heidelberg SL476 Salmonella enterica Heidelberg Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica serovar Heidelberg SL476 4779 423368 peripheral species Salmonella enterica serovar Newport SL254 Salmonella enterica Newport Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica serovar Newport SL254 4805 554290 peripheral species Salmonella enterica serovar Paratyphi A AKU 12601 Salmonella enterica AKU12601 Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 Salmonella enterica serovar Paratyphi A AKU 12601 4076 272994 peripheral species Salmonella enterica serovar Paratyphi B SPB7 Salmonella enterica SPB7 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 Salmonella enterica serovar Paratyphi B SPB7 5592 476213 peripheral species Salmonella enterica serovar Paratyphi C RKS4594 Salmonella enterica RKS4594 Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 Salmonella enterica serovar Paratyphi C RKS4594 4638 439843 peripheral species Salmonella enterica serovar Schwarzengrund CVM19633 Salmonella enterica CVM19633 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 Salmonella enterica serovar Schwarzengrund CVM19633 4627 209261 peripheral species Salmonella enterica serovar Typhi Ty2 Salmonella enterica Ty2 Salmonella enterica subsp. enterica serovar Typhi str. Ty2 Salmonella enterica serovar Typhi Ty2 4314 220341 core species Salmonella typhi Salmonella enterica CT18 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Salmonella typhi 4745 99287 peripheral species Salmonella typhimurium LT2 Salmonella enterica LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella typhimurium LT2 4525 4896 core species Schizosaccharomyces pombe Schizosaccharomyces pombe Schizosaccharomyces pombe Schizosaccharomyces pombe 4985 665079 peripheral species Sclerotinia sclerotiorum 1980 UF-70 Sclerotinia sclerotiorum Sclerotinia sclerotiorum 1980 UF-70 Sclerotinia sclerotiorum 1980 UF-70 14400 526218 core species Sebaldella termitidis ATCC 33386 Sebaldella termitidis Sebaldella termitidis ATCC 33386 Sebaldella termitidis ATCC 33386 4150 399741 core species Serratia proteamaculans 568 Serratia proteamaculans Serratia proteamaculans 568 Serratia proteamaculans 568 4942 326297 peripheral species Shewanella amazonensis SB2B Shewanella amazonensis Shewanella amazonensis SB2B Shewanella amazonensis SB2B 3645 94122 peripheral species Shewanella ANA-3 Shewanella sp. ANA3 Shewanella sp. ANA-3 Shewanella ANA-3 4360 325240 peripheral species Shewanella baltica OS155 Shewanella baltica OS155 Shewanella baltica OS155 Shewanella baltica OS155 4489 402882 peripheral species Shewanella baltica OS185 Shewanella baltica OS185 Shewanella baltica OS185 Shewanella baltica OS185 4394 399599 peripheral species Shewanella baltica OS195 Shewanella baltica OS195 Shewanella baltica OS195 Shewanella baltica OS195 4688 407976 peripheral species Shewanella baltica OS223 Shewanella baltica OS223 Shewanella baltica OS223 Shewanella baltica OS223 4441 318161 peripheral species Shewanella denitrificans OS217 Shewanella denitrificans Shewanella denitrificans OS217 Shewanella denitrificans OS217 3754 318167 peripheral species Shewanella frigidimarina NCIMB 400 Shewanella frigidimarina Shewanella frigidimarina NCIMB 400 Shewanella frigidimarina NCIMB 400 4029 458817 peripheral species Shewanella halifaxensis HAW EB4 Shewanella halifaxensis Shewanella halifaxensis HAW-EB4 Shewanella halifaxensis HAW EB4 4278 323850 peripheral species Shewanella loihica PV-4 Shewanella loihica Shewanella loihica PV-4 Shewanella loihica PV-4 3859 60480 peripheral species Shewanella MR-4 Shewanella sp. MR4 Shewanella sp. MR-4 Shewanella MR-4 3924 60481 peripheral species Shewanella MR-7 Shewanella sp. MR7 Shewanella sp. MR-7 Shewanella MR-7 4014 211586 core species Shewanella oneidensis Shewanella oneidensis MR1 Shewanella oneidensis MR-1 Shewanella oneidensis 4467 398579 peripheral species Shewanella pealeana ATCC 700345 Shewanella pealeana Shewanella pealeana ATCC 700345 Shewanella pealeana ATCC 700345 4241 225849 peripheral species Shewanella piezotolerans WP3 Shewanella piezotolerans Shewanella piezotolerans WP3 Shewanella piezotolerans WP3 4933 319224 peripheral species Shewanella putrefaciens CN-32 Shewanella putrefaciens Shewanella putrefaciens CN-32 Shewanella putrefaciens CN-32 3972 425104 peripheral species Shewanella sediminis HAW-EB3 Shewanella sediminis Shewanella sediminis HAW-EB3 Shewanella sediminis HAW-EB3 4497 351745 peripheral species Shewanella W3-18-1 Shewanella sp. W3181 Shewanella sp. W3-18-1 Shewanella W3-18-1 4044 392500 peripheral species Shewanella woodyi ATCC 51908 Shewanella woodyi Shewanella woodyi ATCC 51908 Shewanella woodyi ATCC 51908 4880 344609 peripheral species Shigella boydii CDC 3083 94 Shigella boydii 3083 Shigella boydii CDC 3083-94 Shigella boydii CDC 3083 94 4557 300268 peripheral species Shigella boydii Sb227 Shigella boydii Sb227 Shigella boydii Sb227 Shigella boydii Sb227 4281 300267 peripheral species Shigella dysenteriae Shigella dysenteriae Shigella dysenteriae Sd197 Shigella dysenteriae 4501 198214 core species Shigella flexneri 2a Shigella flexneri 301 Shigella flexneri 2a str. 301 Shigella flexneri 2a 4439 198215 peripheral species Shigella flexneri 2a 2457T Shigella flexneri 2457T Shigella flexneri 2a str. 2457T Shigella flexneri 2a 2457T 4060 373384 peripheral species Shigella flexneri 5 8401 Shigella flexneri 8401 Shigella flexneri 5 str. 8401 Shigella flexneri 5 8401 4114 300269 peripheral species Shigella sonnei Ss046 Shigella sonnei Shigella sonnei Ss046 Shigella sonnei Ss046 4470 292414 peripheral species Silicibacter TM1040 Ruegeria sp. TM1040 Ruegeria sp. TM1040 Silicibacter TM1040 3864 366394 peripheral species Sinorhizobium medicae WSM419 Sinorhizobium medicae Sinorhizobium medicae WSM419 Sinorhizobium medicae WSM419 6213 266834 core species Sinorhizobium meliloti Sinorhizobium meliloti Sinorhizobium meliloti 1021 Sinorhizobium meliloti 6209 471855 core species Slackia heliotrinireducens DSM 20476 Slackia heliotrinireducens Slackia heliotrinireducens DSM 20476 Slackia heliotrinireducens DSM 20476 2765 343509 core species Sodalis glossinidius morsitans Sodalis glossinidius Sodalis glossinidius str. 'morsitans' Sodalis glossinidius morsitans 2516 234267 core species Solibacter usitatus Ellin6076 Solibacter usitatus Candidatus Solibacter usitatus Ellin6076 Solibacter usitatus Ellin6076 7826 448385 core species Sorangium cellulosum So ce 56 Sorangium cellulosum Sorangium cellulosum 'So ce 56' Sorangium cellulosum So ce 56 9378 4558 peripheral species Sorghum bicolor Sorghum bicolor Sorghum bicolor Sorghum bicolor 34496 479434 core species Sphaerobacter thermophilus DSM 20745 Sphaerobacter thermophilus Sphaerobacter thermophilus DSM 20745 Sphaerobacter thermophilus DSM 20745 3485 392499 core species Sphingomonas wittichii RW1 Sphingomonas wittichii Sphingomonas wittichii RW1 Sphingomonas wittichii RW1 5345 317655 core species Sphingopyxis alaskensis RB2256 Sphingopyxis alaskensis Sphingopyxis alaskensis RB2256 Sphingopyxis alaskensis RB2256 3195 282458 peripheral species Staphylococcus aureus aureus MRSA252 Staphylococcus aureus MRSA252 Staphylococcus aureus subsp. aureus MRSA252 Staphylococcus aureus aureus MRSA252 2648 282459 peripheral species Staphylococcus aureus aureus MSSA476 Staphylococcus aureus MSSA476 Staphylococcus aureus subsp. aureus MSSA476 Staphylococcus aureus aureus MSSA476 2590 93062 peripheral species Staphylococcus aureus COL Staphylococcus aureus COL Staphylococcus aureus subsp. aureus COL Staphylococcus aureus COL 2615 681288 peripheral species Staphylococcus aureus ED98 Staphylococcus aureus ED98 Staphylococcus aureus subsp. aureus ED98 Staphylococcus aureus ED98 2689 359787 peripheral species Staphylococcus aureus JH1 Staphylococcus aureus JH1 Staphylococcus aureus subsp. aureus JH1 Staphylococcus aureus JH1 2780 359786 peripheral species Staphylococcus aureus JH9 Staphylococcus aureus JH9 Staphylococcus aureus subsp. aureus JH9 Staphylococcus aureus JH9 2726 418127 peripheral species Staphylococcus aureus Mu3 Staphylococcus aureus Mu3 Staphylococcus aureus subsp. aureus Mu3 Staphylococcus aureus Mu3 2690 158878 core species Staphylococcus aureus Mu50 Staphylococcus aureus Mu50 Staphylococcus aureus subsp. aureus Mu50 Staphylococcus aureus Mu50 2730 196620 peripheral species Staphylococcus aureus MW2 Staphylococcus aureus MW2 Staphylococcus aureus subsp. aureus MW2 Staphylococcus aureus MW2 2624 158879 peripheral species Staphylococcus aureus N315 Staphylococcus aureus N315 Staphylococcus aureus subsp. aureus N315 Staphylococcus aureus N315 2614 93061 peripheral species Staphylococcus aureus NCTC 8325 Staphylococcus aureus 8325 Staphylococcus aureus subsp. aureus NCTC 8325 Staphylococcus aureus NCTC 8325 2892 426430 peripheral species Staphylococcus aureus Newman Staphylococcus aureus Newman Staphylococcus aureus subsp. aureus str. Newman Staphylococcus aureus Newman 2614 273036 peripheral species Staphylococcus aureus RF122 Staphylococcus aureus RF122 Staphylococcus aureus RF122 Staphylococcus aureus RF122 2509 451515 peripheral species Staphylococcus aureus USA300 FPR3757 Staphylococcus aureus FPR3757 Staphylococcus aureus subsp. aureus USA300_FPR3757 Staphylococcus aureus USA300 FPR3757 2604 451516 peripheral species Staphylococcus aureus USA300 TCH1516 Staphylococcus aureus TCH1516 Staphylococcus aureus subsp. aureus USA300_TCH1516 Staphylococcus aureus USA300 TCH1516 2686 396513 peripheral species Staphylococcus carnosus TM300 Staphylococcus carnosus Staphylococcus carnosus subsp. carnosus TM300 Staphylococcus carnosus TM300 2455 176280 peripheral species Staphylococcus epidermidis ATCC 12228 Staphylococcus epidermidis 12228 Staphylococcus epidermidis ATCC 12228 Staphylococcus epidermidis ATCC 12228 2485 176279 peripheral species Staphylococcus epidermidis RP62A Staphylococcus epidermidis RP62A Staphylococcus epidermidis RP62A Staphylococcus epidermidis RP62A 2525 279808 peripheral species Staphylococcus haemolyticus Staphylococcus haemolyticus Staphylococcus haemolyticus JCSC1435 Staphylococcus haemolyticus 2692 342451 peripheral species Staphylococcus saprophyticus Staphylococcus saprophyticus Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Staphylococcus saprophyticus 2513 399550 core species Staphylothermus marinus F1 Staphylothermus marinus Staphylothermus marinus F1 Staphylothermus marinus F1 1570 522373 core species Stenotrophomonas maltophilia K279a Stenotrophomonas maltophilia K279a Stenotrophomonas maltophilia K279a Stenotrophomonas maltophilia K279a 4386 391008 peripheral species Stenotrophomonas maltophilia R551 3 Stenotrophomonas maltophilia R551 Stenotrophomonas maltophilia R551-3 Stenotrophomonas maltophilia R551 3 4039 519441 core species Streptobacillus moniliformis DSM 12112 Streptobacillus moniliformis Streptobacillus moniliformis DSM 12112 Streptobacillus moniliformis DSM 12112 1442 208435 peripheral species Streptococcus agalactiae 2603 Streptococcus agalactiae 2603V/R Streptococcus agalactiae 2603V/R Streptococcus agalactiae 2603 2124 205921 peripheral species Streptococcus agalactiae A909 Streptococcus agalactiae A909 Streptococcus agalactiae A909 Streptococcus agalactiae A909 1996 211110 peripheral species Streptococcus agalactiae NEM316 Streptococcus agalactiae NEM316 Streptococcus agalactiae NEM316 Streptococcus agalactiae NEM316 2094 486410 peripheral species Streptococcus dysgalactiae equisimilis GGS 124 Streptococcus dysgalactiae Streptococcus dysgalactiae subsp. equisimilis GGS_124 Streptococcus dysgalactiae equisimilis GGS 124 2095 553482 peripheral species Streptococcus equi 4047 Streptococcus equi 4047 Streptococcus equi subsp. equi 4047 Streptococcus equi 4047 2001 553483 peripheral species Streptococcus equi zooepidemicus Streptococcus equi H70 Streptococcus equi subsp. zooepidemicus Streptococcus equi zooepidemicus 1869 552526 peripheral species Streptococcus equi zooepidemicus MGCS10565 Streptococcus equi MGCS10565 Streptococcus equi subsp. zooepidemicus MGCS10565 Streptococcus equi zooepidemicus MGCS10565 1893 467705 peripheral species Streptococcus gordonii Challis substr CH1 Streptococcus gordonii Streptococcus gordonii str. Challis substr. CH1 Streptococcus gordonii Challis substr CH1 2051 210007 peripheral species Streptococcus mutans Streptococcus mutans Streptococcus mutans UA159 Streptococcus mutans 1960 488221 peripheral species Streptococcus pneumoniae 70585 Streptococcus pneumoniae 70585 Streptococcus pneumoniae 70585 Streptococcus pneumoniae 70585 2202 561276 peripheral species Streptococcus pneumoniae ATCC 700669 Streptococcus pneumoniae 700669 Streptococcus pneumoniae ATCC 700669 Streptococcus pneumoniae ATCC 700669 1990 516950 peripheral species Streptococcus pneumoniae CGSP14 Streptococcus pneumoniae CGSP14 Streptococcus pneumoniae CGSP14 Streptococcus pneumoniae CGSP14 2206 373153 peripheral species Streptococcus pneumoniae D39 Streptococcus pneumoniae D39 Streptococcus pneumoniae D39 Streptococcus pneumoniae D39 1914 512566 peripheral species Streptococcus pneumoniae G54 Streptococcus pneumoniae G54 Streptococcus pneumoniae G54 Streptococcus pneumoniae G54 2115 487214 peripheral species Streptococcus pneumoniae Hungary19A 6 Streptococcus pneumoniae 19A6 Streptococcus pneumoniae Hungary19A-6 Streptococcus pneumoniae Hungary19A 6 2155 488222 peripheral species Streptococcus pneumoniae JJA Streptococcus pneumoniae JJA Streptococcus pneumoniae JJA Streptococcus pneumoniae JJA 2123 488223 peripheral species Streptococcus pneumoniae P1031 Streptococcus pneumoniae P1031 Streptococcus pneumoniae P1031 Streptococcus pneumoniae P1031 2073 171101 peripheral species Streptococcus pneumoniae R6 Streptococcus pneumoniae R6 Streptococcus pneumoniae R6 Streptococcus pneumoniae R6 2042 487213 peripheral species Streptococcus pneumoniae Taiwan19F 14 Streptococcus pneumoniae 19F14 Streptococcus pneumoniae Taiwan19F-14 Streptococcus pneumoniae Taiwan19F 14 2044 170187 core species Streptococcus pneumoniae TIGR4 Streptococcus pneumoniae TIGR4 Streptococcus pneumoniae TIGR4 Streptococcus pneumoniae TIGR4 2105 160490 peripheral species Streptococcus pyogenes M1 GAS Streptococcus pyogenes M1GAS Streptococcus pyogenes M1 GAS Streptococcus pyogenes M1 GAS 1696 160491 peripheral species Streptococcus pyogenes Manfredo Streptococcus pyogenes Manfredo Streptococcus pyogenes str. Manfredo Streptococcus pyogenes Manfredo 1745 370552 peripheral species Streptococcus pyogenes MGAS10270 Streptococcus pyogenes MGAS10270 Streptococcus pyogenes MGAS10270 Streptococcus pyogenes MGAS10270 1986 286636 peripheral species Streptococcus pyogenes MGAS10394 Streptococcus pyogenes MGAS10394 Streptococcus pyogenes MGAS10394 Streptococcus pyogenes MGAS10394 1886 370554 peripheral species Streptococcus pyogenes MGAS10750 Streptococcus pyogenes MGAS10750 Streptococcus pyogenes MGAS10750 Streptococcus pyogenes MGAS10750 1979 370553 peripheral species Streptococcus pyogenes MGAS2096 Streptococcus pyogenes MGAS2096 Streptococcus pyogenes MGAS2096 Streptococcus pyogenes MGAS2096 1898 198466 peripheral species Streptococcus pyogenes MGAS315 Streptococcus pyogenes MGAS315 Streptococcus pyogenes MGAS315 Streptococcus pyogenes MGAS315 1865 293653 peripheral species Streptococcus pyogenes MGAS5005 Streptococcus pyogenes MGAS5005 Streptococcus pyogenes MGAS5005 Streptococcus pyogenes MGAS5005 1865 319701 peripheral species Streptococcus pyogenes MGAS6180 Streptococcus pyogenes MGAS6180 Streptococcus pyogenes MGAS6180 Streptococcus pyogenes MGAS6180 1894 186103 peripheral species Streptococcus pyogenes MGAS8232 Streptococcus pyogenes MGAS8232 Streptococcus pyogenes MGAS8232 Streptococcus pyogenes MGAS8232 1839 370551 peripheral species Streptococcus pyogenes MGAS9429 Streptococcus pyogenes MGAS9429 Streptococcus pyogenes MGAS9429 Streptococcus pyogenes MGAS9429 1877 471876 peripheral species Streptococcus pyogenes NZ131 Streptococcus pyogenes NZ131 Streptococcus pyogenes NZ131 Streptococcus pyogenes NZ131 1700 193567 peripheral species Streptococcus pyogenes SSI-1 Streptococcus pyogenes SSI1 Streptococcus pyogenes SSI-1 Streptococcus pyogenes SSI-1 1859 388919 peripheral species Streptococcus sanguinis SK36 Streptococcus sanguinis Streptococcus sanguinis SK36 Streptococcus sanguinis SK36 2270 391295 peripheral species Streptococcus suis 05ZYH33 Streptococcus suis 05ZYH33 Streptococcus suis 05ZYH33 Streptococcus suis 05ZYH33 2186 391296 peripheral species Streptococcus suis 98HAH33 Streptococcus suis 98HAH33 Streptococcus suis 98HAH33 Streptococcus suis 98HAH33 2185 568814 peripheral species Streptococcus suis BM407 Streptococcus suis BM407 Streptococcus suis BM407 Streptococcus suis BM407 1945 218494 peripheral species Streptococcus suis P1 7 Streptococcus suis P17 Streptococcus suis P1/7 Streptococcus suis P1 7 1824 568813 peripheral species Streptococcus suis SC84 Streptococcus suis SC84 Streptococcus suis SC84 Streptococcus suis SC84 1898 299768 peripheral species Streptococcus thermophilus CNRZ1066 Streptococcus thermophilus Z1066 Streptococcus thermophilus CNRZ1066 Streptococcus thermophilus CNRZ1066 1915 322159 peripheral species Streptococcus thermophilus LMD-9 Streptococcus thermophilus LMD9 Streptococcus thermophilus LMD-9 Streptococcus thermophilus LMD-9 1715 264199 peripheral species Streptococcus thermophilus LMG 18311 Streptococcus thermophilus 18311 Streptococcus thermophilus LMG 18311 Streptococcus thermophilus LMG 18311 1889 218495 peripheral species Streptococcus uberis 0140J Streptococcus uberis Streptococcus uberis 0140J Streptococcus uberis 0140J 1762 227882 peripheral species Streptomyces avermitilis Streptomyces avermitilis Streptomyces avermitilis MA-4680 Streptomyces avermitilis 7676 100226 core species Streptomyces coelicolor Streptomyces coelicolor Streptomyces coelicolor A3(2) Streptomyces coelicolor 8129 455632 peripheral species Streptomyces griseus NBRC 13350 Streptomyces griseus Streptomyces griseus subsp. griseus NBRC 13350 Streptomyces griseus NBRC 13350 7136 479432 core species Streptosporangium roseum DSM 43021 Streptosporangium roseum Streptosporangium roseum DSM 43021 Streptosporangium roseum DSM 43021 8975 330779 peripheral species Sulfolobus acidocaldarius DSM 639 Sulfolobus acidocaldarius Sulfolobus acidocaldarius DSM 639 Sulfolobus acidocaldarius DSM 639 2223 429572 peripheral species Sulfolobus islandicus L S 2 15 Sulfolobus islandicus LS215 Sulfolobus islandicus L.S.2.15 Sulfolobus islandicus L S 2 15 2737 427317 peripheral species Sulfolobus islandicus M 14 25 Sulfolobus islandicus M1425 Sulfolobus islandicus M.14.25 Sulfolobus islandicus M 14 25 2608 427318 peripheral species Sulfolobus islandicus M 16 27 Sulfolobus islandicus M1627 Sulfolobus islandicus M.16.27 Sulfolobus islandicus M 16 27 2656 426118 peripheral species Sulfolobus islandicus M 16 4 Sulfolobus islandicus M164 Sulfolobus islandicus M.16.4 Sulfolobus islandicus M 16 4 2735 439386 peripheral species Sulfolobus islandicus Y G 57 14 Sulfolobus islandicus YG5714 Sulfolobus islandicus Y.G.57.14 Sulfolobus islandicus Y G 57 14 2903 419942 peripheral species Sulfolobus islandicus Y N 15 51 Sulfolobus islandicus YN1551 Sulfolobus islandicus Y.N.15.51 Sulfolobus islandicus Y N 15 51 2900 273057 core species Sulfolobus solfataricus Sulfolobus solfataricus Sulfolobus solfataricus P2 Sulfolobus solfataricus 2977 273063 peripheral species Sulfolobus tokodaii Sulfolobus tokodaii Sulfolobus tokodaii str. 7 Sulfolobus tokodaii 2825 204536 peripheral species Sulfurihydrogenibium azorense Az Fu1 Sulfurihydrogenibium azorense Sulfurihydrogenibium azorense Az-Fu1 Sulfurihydrogenibium azorense Az Fu1 1723 436114 core species Sulfurihydrogenibium YO3AOP1 Sulfurihydrogenibium sp. YO3AOP1 Sulfurihydrogenibium sp. YO3AOP1 Sulfurihydrogenibium YO3AOP1 1721 525898 core species Sulfurospirillum deleyianum DSM 6946 Sulfurospirillum deleyianum Sulfurospirillum deleyianum DSM 6946 Sulfurospirillum deleyianum DSM 6946 2265 387093 core species Sulfurovum NBC37-1 Sulfurovum sp. NBC371 Sulfurovum sp. NBC37-1 Sulfurovum NBC37-1 2438 9823 peripheral species Sus scrofa Sus scrofa Sus scrofa Sus scrofa 17493 292459 core species Symbiobacterium thermophilum IAM14863 Symbiobacterium thermophilum Symbiobacterium thermophilum IAM 14863 Symbiobacterium thermophilum IAM14863 3338 64471 peripheral species Synechococcus CC9311 Synechococcus sp. CC9311 Synechococcus sp. CC9311 Synechococcus CC9311 2892 110662 peripheral species Synechococcus CC9605 Synechococcus sp. CC9605 Synechococcus sp. CC9605 Synechococcus CC9605 2645 316279 peripheral species Synechococcus CC9902 Synechococcus sp. CC9902 Synechococcus sp. CC9902 Synechococcus CC9902 2306 269084 peripheral species Synechococcus elongatus PCC 6301 Synechococcus elongatus 6301 Synechococcus elongatus PCC 6301 Synechococcus elongatus PCC 6301 2527 1140 peripheral species Synechococcus elongatus PCC 7942 Synechococcus elongatus 7942 Synechococcus elongatus PCC 7942 Synechococcus elongatus PCC 7942 2662 32049 peripheral species Synechococcus PCC 7002 Synechococcus sp. 7002 Synechococcus sp. PCC 7002 Synechococcus PCC 7002 3186 316278 peripheral species Synechococcus RCC307 Synechococcus sp. RCC307 Synechococcus sp. RCC307 Synechococcus RCC307 2532 84588 core species Synechococcus sp WH8102 Synechococcus sp. WH8102 Synechococcus sp. WH 8102 Synechococcus sp WH8102 2519 32051 peripheral species Synechococcus WH 7803 Synechococcus sp. WH7803 Synechococcus sp. WH 7803 Synechococcus WH 7803 2533 1148 core species Synechocystis PCC6803 Synechocystis sp. 6803 Synechocystis sp. PCC 6803 Synechocystis PCC6803 3569 335543 core species Syntrophobacter fumaroxidans MPOB Syntrophobacter fumaroxidans Syntrophobacter fumaroxidans MPOB Syntrophobacter fumaroxidans MPOB 4064 335541 core species Syntrophomonas wolfei Goettingen Syntrophomonas wolfei Syntrophomonas wolfei subsp. wolfei str. Goettingen Syntrophomonas wolfei Goettingen 2504 56780 core species Syntrophus aciditrophicus SB Syntrophus aciditrophicus Syntrophus aciditrophicus SB Syntrophus aciditrophicus SB 3168 59729 peripheral species Taeniopygia guttata Taeniopygia guttata Taeniopygia guttata Taeniopygia guttata 17475 31033 peripheral species Takifugu rubripes Takifugu rubripes Takifugu rubripes Takifugu rubripes 18523 377629 core species Teredinibacter turnerae T7901 Teredinibacter turnerae Teredinibacter turnerae T7901 Teredinibacter turnerae T7901 4254 99883 peripheral species Tetraodon nigroviridis Tetraodon nigroviridis Tetraodon nigroviridis Tetraodon nigroviridis 19602 35128 core species Thalassiosira pseudonana CCMP 1335 Thalassiosira pseudonana Thalassiosira pseudonana Thalassiosira pseudonana CCMP 1335 11776 85643 core species Thauera MZ1T Thauera sp. MZ1T Thauera sp. MZ1T Thauera MZ1T 3978 5874 peripheral species Theileria annulata Theileria annulata Theileria annulata Theileria annulata 3791 5875 peripheral species Theileria parva Theileria parva Theileria parva Theileria parva 2223 525903 core species Thermanaerovibrio acidaminovorans DSM 6589 Thermanaerovibrio acidaminovorans Thermanaerovibrio acidaminovorans DSM 6589 Thermanaerovibrio acidaminovorans DSM 6589 1738 340099 peripheral species Thermoanaerobacter pseudethanolicus ATCC 33223 Thermoanaerobacter pseudethanolicus Thermoanaerobacter pseudethanolicus ATCC 33223 Thermoanaerobacter pseudethanolicus ATCC 33223 2243 273068 core species Thermoanaerobacter tengcongensis Thermoanaerobacter tengcongensis Thermoanaerobacter tengcongensis MB4 Thermoanaerobacter tengcongensis 2588 399726 peripheral species Thermoanaerobacter X514 Thermoanaerobacter sp. X514 Thermoanaerobacter sp. X514 Thermoanaerobacter X514 2349 525904 core species Thermobaculum terrenum ATCC BAA 798 Thermobaculum terrenum Thermobaculum terrenum ATCC BAA-798 Thermobaculum terrenum ATCC BAA 798 2832 269800 core species Thermobifida fusca YX Thermobifida fusca Thermobifida fusca YX Thermobifida fusca YX 3110 593117 peripheral species Thermococcus gammatolerans EJ3 Thermococcus gammatolerans Thermococcus gammatolerans EJ3 Thermococcus gammatolerans EJ3 2156 69014 core species Thermococcus kodakaraensis KOD1 Thermococcus kodakarensis Thermococcus kodakarensis KOD1 Thermococcus kodakaraensis KOD1 2306 523850 peripheral species Thermococcus onnurineus NA1 Thermococcus onnurineus Thermococcus onnurineus NA1 Thermococcus onnurineus NA1 1975 604354 peripheral species Thermococcus sibiricus MM 739 Thermococcus sibiricus Thermococcus sibiricus MM 739 Thermococcus sibiricus MM 739 2035 289376 core species Thermodesulfovibrio yellowstonii DSM 11347 Thermodesulfovibrio yellowstonii Thermodesulfovibrio yellowstonii DSM 11347 Thermodesulfovibrio yellowstonii DSM 11347 2033 368408 core species Thermofilum pendens Hrk 5 Thermofilum pendens Thermofilum pendens Hrk 5 Thermofilum pendens Hrk 5 1876 309801 core species Thermomicrobium roseum DSM 5159 Thermomicrobium roseum Thermomicrobium roseum DSM 5159 Thermomicrobium roseum DSM 5159 2854 471852 core species Thermomonospora curvata DSM 43183 Thermomonospora curvata Thermomonospora curvata DSM 43183 Thermomonospora curvata DSM 43183 4890 273075 core species Thermoplasma acidophilum Thermoplasma acidophilum Thermoplasma acidophilum DSM 1728 Thermoplasma acidophilum 1482 273116 peripheral species Thermoplasma volcanium Thermoplasma volcanium Thermoplasma volcanium GSS1 Thermoplasma volcanium 1499 444157 core species Thermoproteus neutrophilus V24Sta Thermoproteus neutrophilus Thermoproteus neutrophilus V24Sta Thermoproteus neutrophilus V24Sta 1966 484019 peripheral species Thermosipho africanus TCF52B Thermosipho africanus Thermosipho africanus TCF52B Thermosipho africanus TCF52B 1954 391009 core species Thermosipho melanesiensis BI429 Thermosipho melanesiensis Thermosipho melanesiensis BI429 Thermosipho melanesiensis BI429 1879 197221 core species Thermosynechococcus elongatus Thermosynechococcus elongatus Thermosynechococcus elongatus BP-1 Thermosynechococcus elongatus 2476 416591 peripheral species Thermotoga lettingae TMO Thermotoga lettingae Thermotoga lettingae TMO Thermotoga lettingae TMO 2040 243274 core species Thermotoga maritima Thermotoga maritima Thermotoga maritima MSB8 Thermotoga maritima 1858 590168 peripheral species Thermotoga naphthophila RKU 10 Thermotoga naphthophila Thermotoga naphthophila RKU-10 Thermotoga naphthophila RKU 10 1768 309803 peripheral species Thermotoga neapolitana DSM 4359 Thermotoga neapolitana Thermotoga neapolitana DSM 4359 Thermotoga neapolitana DSM 4359 1937 390874 peripheral species Thermotoga petrophila RKU-1 Thermotoga petrophila Thermotoga petrophila RKU-1 Thermotoga petrophila RKU-1 1785 126740 peripheral species Thermotoga RQ2 Thermotoga sp. RQ2 Thermotoga sp. RQ2 Thermotoga RQ2 1819 262724 core species Thermus thermophilus HB27 Thermus thermophilus HB27 Thermus thermophilus HB27 Thermus thermophilus HB27 2210 300852 peripheral species Thermus thermophilus HB8 Thermus thermophilus HB8 Thermus thermophilus HB8 Thermus thermophilus HB8 2238 396588 core species Thioalkalivibrio HL EbGR7 Thioalkalivibrio sp. HLEbGR7 Thioalkalivibrio sp. HL-EbGR7 Thioalkalivibrio HL EbGR7 3283 292415 core species Thiobacillus denitrificans ATCC 25259 Thiobacillus denitrificans Thiobacillus denitrificans ATCC 25259 Thiobacillus denitrificans ATCC 25259 2827 317025 core species Thiomicrospira crunogena XCL-2 Thiomicrospira crunogena Thiomicrospira crunogena XCL-2 Thiomicrospira crunogena XCL-2 2196 326298 peripheral species Thiomicrospira denitrificans ATCC 33889 Sulfurimonas denitrificans Sulfurimonas denitrificans DSM 1251 Thiomicrospira denitrificans ATCC 33889 2096 595494 core species Tolumonas auensis DSM 9187 Tolumonas auensis Tolumonas auensis DSM 9187 Tolumonas auensis DSM 9187 3130 243275 peripheral species Treponema denticola ATCC 35405 Treponema denticola Treponema denticola ATCC 35405 Treponema denticola ATCC 35405 2767 243276 core species Treponema pallidum Treponema pallidum Nichols Treponema pallidum subsp. pallidum str. Nichols Treponema pallidum 1036 455434 peripheral species Treponema pallidum SS14 Treponema pallidum SS14 Treponema pallidum subsp. pallidum SS14 Treponema pallidum SS14 1028 51453 peripheral species Trichoderma reesei Hypocrea jecorina Hypocrea jecorina Trichoderma reesei 9129 203124 core species Trichodesmium erythraeum IMS101 Trichodesmium erythraeum IMS101 Trichodesmium erythraeum IMS101 Trichodesmium erythraeum IMS101 4451 10228 peripheral species Trichoplax adhaerens Trichoplax adhaerens Trichoplax adhaerens Trichoplax adhaerens 11520 218496 peripheral species Tropheryma whipplei TW08 27 Tropheryma whipplei TW0827 Tropheryma whipplei TW08/27 Tropheryma whipplei TW08 27 783 203267 core species Tropheryma whipplei Twist Tropheryma whipplei Twist Tropheryma whipplei str. Twist Tropheryma whipplei Twist 808 5691 core species Trypanosoma brucei Trypanosoma brucei Trypanosoma brucei Trypanosoma brucei 8772 351160 core species uncultured methanogenic archaeon RC-I Uncultured archaeon RC1 uncultured methanogenic archaeon RC-I uncultured methanogenic archaeon RC-I 3085 471821 core species uncultured Termite group 1 bacterium phylotype Rs D17 Uncultered bacterium TG1RsD17 uncultured Termite group 1 bacterium phylotype Rs-D17 uncultured Termite group 1 bacterium phylotype Rs D17 776 505682 peripheral species Ureaplasma parvum serovar 3 ATCC 27815 Ureaplasma parvum 27815 Ureaplasma parvum serovar 3 str. ATCC 27815 Ureaplasma parvum serovar 3 ATCC 27815 609 273119 core species Ureaplasma urealyticum Ureaplasma parvum 700970 Ureaplasma parvum serovar 3 str. ATCC 700970 Ureaplasma urealyticum 614 565575 peripheral species Ureaplasma urealyticum serovar 10 ATCC 33699 Ureaplasma urealyticum Ureaplasma urealyticum serovar 10 str. ATCC 33699 Ureaplasma urealyticum serovar 10 ATCC 33699 646 5270 core species Ustilago maydis Ustilago maydis Ustilago maydis Ustilago maydis 6538 436907 peripheral species Vanderwaltozyma polyspora DSM 70294 Vanderwaltozyma polyspora Vanderwaltozyma polyspora DSM 70294 Vanderwaltozyma polyspora DSM 70294 5353 543728 core species Variovorax paradoxus S110 Variovorax paradoxus Variovorax paradoxus S110 Variovorax paradoxus S110 6279 479436 core species Veillonella parvula DSM 2008 Veillonella parvula Veillonella parvula DSM 2008 Veillonella parvula DSM 2008 1844 391735 core species Verminephrobacter eiseniae EF01-2 Verminephrobacter eiseniae Verminephrobacter eiseniae EF01-2 Verminephrobacter eiseniae EF01-2 4947 243277 core species Vibrio cholerae Vibrio cholerae N16961 Vibrio cholerae O1 biovar El Tor str. N16961 Vibrio cholerae 3834 579112 peripheral species Vibrio cholerae M66 2 Vibrio cholerae M662 Vibrio cholerae M66-2 Vibrio cholerae M66 2 3693 593588 peripheral species Vibrio cholerae MJ 1236 Vibrio cholerae MJ1236 Vibrio cholerae MJ-1236 Vibrio cholerae MJ 1236 3772 345073 peripheral species Vibrio cholerae O395 Vibrio cholerae O395 Vibrio cholerae O395 Vibrio cholerae O395 3875 150340 peripheral species Vibrio Ex25 Vibrio sp. Ex25 Vibrio sp. Ex25 Vibrio Ex25 4518 312309 peripheral species Vibrio fischeri ES114 Vibrio fischeri ES114 Vibrio fischeri ES114 Vibrio fischeri ES114 3817 388396 peripheral species Vibrio fischeri MJ11 Vibrio fischeri MJ11 Vibrio fischeri MJ11 Vibrio fischeri MJ11 4039 338187 peripheral species Vibrio harveyi ATCC BAA-1116 Vibrio harveyi Vibrio harveyi ATCC BAA-1116 Vibrio harveyi ATCC BAA-1116 6039 223926 peripheral species Vibrio parahaemolyticus Vibrio parahaemolyticus Vibrio parahaemolyticus RIMD 2210633 Vibrio parahaemolyticus 4832 575788 peripheral species Vibrio splendidus LGP32 Vibrio splendidus Vibrio splendidus LGP32 Vibrio splendidus LGP32 4431 216895 peripheral species Vibrio vulnificus CMCP6 Vibrio vulnificus CMCP6 Vibrio vulnificus CMCP6 Vibrio vulnificus CMCP6 4472 196600 peripheral species Vibrio vulnificus YJ016 Vibrio vulnificus YJ016 Vibrio vulnificus YJ016 Vibrio vulnificus YJ016 5024 29760 peripheral species Vitis vinifera Vitis vinifera Vitis vinifera Vitis vinifera 30434 36870 core species Wigglesworthia brevipalpis Wigglesworthia glossinidia Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis Wigglesworthia brevipalpis 617 292805 peripheral species Wolbachia endosymbiont of Brugia malayi TRS Wolbachia sp. Bm Wolbachia endosymbiont strain TRS of Brugia malayi Wolbachia endosymbiont of Brugia malayi TRS 804 570417 peripheral species Wolbachia endosymbiont of Culex quinquefasciatus Pel Wolbachia sp. Cql Wolbachia endosymbiont of Culex quinquefasciatus Pel Wolbachia endosymbiont of Culex quinquefasciatus Pel 1274 163164 core species Wolbachia endosymbiont of Drosophila melanogaster Wolbachia sp. Dm Wolbachia endosymbiont of Drosophila melanogaster Wolbachia endosymbiont of Drosophila melanogaster 1195 66084 peripheral species Wolbachia wRi Wolbachia sp. wRi Wolbachia sp. wRi Wolbachia wRi 1150 273121 core species Wolinella succinogenes Wolinella succinogenes Wolinella succinogenes DSM 1740 Wolinella succinogenes 2042 78245 core species Xanthobacter autotrophicus Py2 Xanthobacter autotrophicus Xanthobacter autotrophicus Py2 Xanthobacter autotrophicus Py2 5035 314565 peripheral species Xanthomonas campestris 8004 Xanthomonas campestris 8004 Xanthomonas campestris pv. campestris str. 8004 Xanthomonas campestris 8004 4271 190485 core species Xanthomonas campestris ATCC 33913 Xanthomonas campestris 33913 Xanthomonas campestris pv. campestris str. ATCC 33913 Xanthomonas campestris ATCC 33913 4179 509169 peripheral species Xanthomonas campestris B100 Xanthomonas campestris B100 Xanthomonas campestris pv. campestris str. B100 Xanthomonas campestris B100 4466 316273 peripheral species Xanthomonas campestris vesicatoria 85-10 Xanthomonas campestris 8510 Xanthomonas campestris pv. vesicatoria str. 85-10 Xanthomonas campestris vesicatoria 85-10 4726 190486 peripheral species Xanthomonas citri Xanthomonas axonopodis 306 Xanthomonas axonopodis pv. citri str. 306 Xanthomonas citri 4427 291331 peripheral species Xanthomonas oryzae KACC10331 Xanthomonas oryzae 10331 Xanthomonas oryzae pv. oryzae KACC10331 Xanthomonas oryzae KACC10331 4062 342109 peripheral species Xanthomonas oryzae MAFF 311018 Xanthomonas oryzae 311018 Xanthomonas oryzae pv. oryzae MAFF 311018 Xanthomonas oryzae MAFF 311018 4372 360094 peripheral species Xanthomonas oryzae PXO99A Xanthomonas oryzae PXO99A Xanthomonas oryzae pv. oryzae PXO99A Xanthomonas oryzae PXO99A 4988 8364 core species Xenopus tropicalis Xenopus (Silurana) tropicalis Xenopus (Silurana) tropicalis Xenopus tropicalis 18023 446471 core species Xylanimonas cellulosilytica DSM 15894 Xylanimonas cellulosilytica Xylanimonas cellulosilytica DSM 15894 Xylanimonas cellulosilytica DSM 15894 3443 160492 core species Xylella fastidiosa Xylella fastidiosa 9a5c Xylella fastidiosa 9a5c Xylella fastidiosa 2832 405440 peripheral species Xylella fastidiosa M12 Xylella fastidiosa M12 Xylella fastidiosa M12 Xylella fastidiosa M12 2104 405441 peripheral species Xylella fastidiosa M23 Xylella fastidiosa M23 Xylella fastidiosa M23 Xylella fastidiosa M23 2201 183190 peripheral species Xylella fastidiosa Temecula1 Xylella fastidiosa Temecula1 Xylella fastidiosa Temecula1 Xylella fastidiosa Temecula1 2036 4952 core species Yarrowia lipolytica Yarrowia lipolytica Yarrowia lipolytica Yarrowia lipolytica 6418 393305 peripheral species Yersinia enterocolitica 8081 Yersinia enterocolitica Yersinia enterocolitica subsp. enterocolitica 8081 Yersinia enterocolitica 8081 4050 349746 peripheral species Yersinia pestis Angola Yersinia pestis Angola Yersinia pestis Angola Yersinia pestis Angola 4040 360102 peripheral species Yersinia pestis Antiqua Yersinia pestis Antiqua Yersinia pestis Antiqua Yersinia pestis Antiqua 4363 229193 peripheral species Yersinia pestis biovar Microtus 91001 Yersinia pestis Microtus Yersinia pestis biovar Microtus str. 91001 Yersinia pestis biovar Microtus 91001 4138 214092 core species Yersinia pestis CO92 Yersinia pestis CO92 Yersinia pestis CO92 Yersinia pestis CO92 4051 187410 peripheral species Yersinia pestis KIM 10 Yersinia pestis KIM10 Yersinia pestis KIM 10 Yersinia pestis KIM 10 4166 377628 peripheral species Yersinia pestis Nepal516 Yersinia pestis Nepal516 Yersinia pestis Nepal516 Yersinia pestis Nepal516 4094 386656 peripheral species Yersinia pestis Pestoides F Yersinia pestis Pestoides Yersinia pestis Pestoides F Yersinia pestis Pestoides F 4069 349747 peripheral species Yersinia pseudotuberculosis IP 31758 Yersinia pseudotuberculosis 31758 Yersinia pseudotuberculosis IP 31758 Yersinia pseudotuberculosis IP 31758 4323 273123 peripheral species Yersinia pseudotuberculosis IP32953 Yersinia pseudotuberculosis 32953 Yersinia pseudotuberculosis IP 32953 Yersinia pseudotuberculosis IP32953 4038 502801 peripheral species Yersinia pseudotuberculosis PB1 Yersinia pseudotuberculosis PB1 Yersinia pseudotuberculosis PB1/+ Yersinia pseudotuberculosis PB1 4237 502800 peripheral species Yersinia pseudotuberculosis YPIII Yersinia pseudotuberculosis YPIII Yersinia pseudotuberculosis YPIII Yersinia pseudotuberculosis YPIII 4192 559307 peripheral species Zygosaccharomyces rouxii CBS 732 Zygosaccharomyces rouxii Zygosaccharomyces rouxii CBS 732 Zygosaccharomyces rouxii CBS 732 4991 622759 peripheral species Zymomonas mobilis NCIMB 11163 Zymomonas mobilis 11163 Zymomonas mobilis subsp. mobilis NCIMB 11163 Zymomonas mobilis NCIMB 11163 1884 264203 core species Zymomonas mobilis ZM4 Zymomonas mobilis ZM4 Zymomonas mobilis subsp. mobilis ZM4 Zymomonas mobilis ZM4 1998 121224 core species Pediculus humanus corporis Pediculus humanus Pediculus humanus corporis Pediculus humanus corporis 10748 294381 core species Entamoeba histolytica HM-1:IMSS Entamoeba histolytica Entamoeba histolytica HM-1:IMSS Entamoeba histolytica HM-1:IMSS 7584 5722 core species Trichomonas vaginalis Trichomonas vaginalis Trichomonas vaginalis Trichomonas vaginalis 43151 5911 core species Tetrahymena thermophila Tetrahymena thermophila Tetrahymena thermophila Tetrahymena thermophila 24886 6085 core species Hydra magnipapillata Hydra magnipapillata Hydra magnipapillata Hydra magnipapillata 15744 70448 core species Ostreococcus tauri Ostreococcus tauri Ostreococcus tauri Ostreococcus tauri 7983 6182 core species Schistosoma japonicum Schistosoma japonicum Schistosoma japonicum Schistosoma japonicum 10131 7070 core species Tribolium castaneum Tribolium castaneum Tribolium castaneum Tribolium castaneum 11542 7425 core species Nasonia vitripennis Nasonia vitripennis Nasonia vitripennis Nasonia vitripennis 9481 7460 core species Apis mellifera Apis mellifera Apis mellifera Apis mellifera 9143 7668 core species Strongylocentrotus purpuratus Strongylocentrotus purpuratus Strongylocentrotus purpuratus Strongylocentrotus purpuratus 20252