## taxon_id STRING_type STRING_name_compact official_name_NCBI 882 core Desulfovibrio vulgaris Hildenborough Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 1140 periphery Synechococcus elongatus PCC7942 Synechococcus elongatus PCC 7942 1148 core Synechocystis sp. Synechocystis sp. PCC 6803 3702 core Arabidopsis thaliana Arabidopsis thaliana 4896 core Schizosaccharomyces pombe Schizosaccharomyces pombe 4924 core Pichia stipitis Pichia stipitis 4932 core Saccharomyces cerevisiae Saccharomyces cerevisiae 4952 core Yarrowia lipolytica Yarrowia lipolytica 4959 core Debaryomyces hansenii Debaryomyces hansenii 5085 core Aspergillus fumigatus Aspergillus fumigatus 5141 core Neurospora crassa Neurospora crassa 5207 core Filobasidiella neoformans Filobasidiella neoformans 5270 core Ustilago maydis Ustilago maydis 5478 core Candida glabrata Candida glabrata 5518 core Gibberella zeae Gibberella zeae 5671 core Leishmania infantum Leishmania infantum 5691 core Trypanosoma brucei Trypanosoma brucei 5807 core Cryptosporidium parvum Cryptosporidium parvum 5833 core Plasmodium falciparum Plasmodium falciparum 6035 core Encephalitozoon cuniculi Encephalitozoon cuniculi 6239 core Caenorhabditis elegans Caenorhabditis elegans 7159 periphery Aedes aegypti Aedes aegypti 7165 periphery Anopheles gambiae Anopheles gambiae 7227 core Drosophila melanogaster Drosophila melanogaster 7719 core Ciona intestinalis Ciona intestinalis 7955 core Danio rerio Danio rerio 8090 periphery Oryzias latipes Oryzias latipes 8364 core Xenopus tropicalis Xenopus tropicalis 9031 core Gallus gallus Gallus gallus 9258 periphery Ornithorhynchus anatinus Ornithorhynchus anatinus 9361 periphery Dasypus novemcinctus Dasypus novemcinctus 9365 periphery Erinaceus europaeus Erinaceus europaeus 9371 periphery Echinops telfairi Echinops telfairi 9544 periphery Macaca mulatta Macaca mulatta 9598 periphery Pan troglodytes Pan troglodytes 9606 core Homo sapiens Homo sapiens 9615 core Canis lupus Canis lupus familiaris 9685 periphery Felis catus Felis catus 9785 periphery Loxodonta africana Loxodonta africana 9913 periphery Bos taurus Bos taurus 9986 periphery Oryctolagus cuniculus Oryctolagus cuniculus 10090 core Mus musculus Mus musculus 10116 periphery Rattus norvegicus Rattus norvegicus 10141 periphery Cavia porcellus Cavia porcellus 13616 core Monodelphis domestica Monodelphis domestica 28985 core Kluyveromyces lactis Kluyveromyces lactis 30611 periphery Otolemur garnettii Otolemur garnettii 31033 periphery Takifugu rubripes Takifugu rubripes 32051 periphery Synechococcus sp. 7803 Synechococcus sp. WH 7803 33169 core Eremothecium gossypii Eremothecium gossypii 36870 core Wigglesworthia glossinidia Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis 37347 periphery Tupaia belangeri Tupaia belangeri 42254 periphery Sorex araneus Sorex araneus 43179 periphery Spermophilus tridecemlineatus Spermophilus tridecemlineatus 44689 core Dictyostelium discoideum Dictyostelium discoideum 51511 periphery Ciona savignyi Ciona savignyi 56780 core Syntrophus aciditrophicus Syntrophus aciditrophicus SB 59463 periphery Myotis lucifugus Myotis lucifugus 59919 periphery Prochlorococcus marinus CCMP1986 Prochlorococcus marinus subsp. pastoris str. CCMP1986 59920 periphery Prochlorococcus marinus NATL2A Prochlorococcus marinus str. NATL2A 59922 periphery Prochlorococcus marinus 9303 Prochlorococcus marinus str. MIT 9303 60480 periphery Shewanella sp. MR4 Shewanella sp. MR-4 60481 periphery Shewanella sp. MR7 Shewanella sp. MR-7 62928 periphery Azoarcus sp. BH72 Azoarcus sp. BH72 62977 core Acinetobacter sp. ADP1 Acinetobacter sp. ADP1 64091 core Halobacterium sp. Halobacterium sp. NRC-1 64471 periphery Synechococcus sp. CC9311 Synechococcus sp. CC9311 66692 periphery Bacillus clausii Bacillus clausii KSM-K16 69014 core Thermococcus kodakarensis Thermococcus kodakarensis KOD1 69293 periphery Gasterosteus aculeatus Gasterosteus aculeatus 70601 core Pyrococcus horikoshii Pyrococcus horikoshii OT3 71421 core Haemophilus influenzae KW20 Haemophilus influenzae Rd KW20 74546 periphery Prochlorococcus marinus 9312 Prochlorococcus marinus str. MIT 9312 74547 core Prochlorococcus marinus 9313 Prochlorococcus marinus str. MIT 9313 76114 core Azoarcus sp. EbN1 Azoarcus sp. EbN1 78245 core Xanthobacter autotrophicus Xanthobacter autotrophicus Py2 83331 periphery Mycobacterium tuberculosis CDC1551 Mycobacterium tuberculosis CDC1551 83332 core Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis H37Rv 83333 core Escherichia coli K12 Escherichia coli K12 84588 core Synechococcus sp. 8102 Synechococcus sp. WH 8102 85962 core Helicobacter pylori 26695 Helicobacter pylori 26695 85963 periphery Helicobacter pylori J99 Helicobacter pylori J99 93060 periphery Prochlorococcus marinus 9215 Prochlorococcus marinus str. MIT 9215 93061 periphery Staphylococcus aureus 8325 Staphylococcus aureus subsp. aureus NCTC 8325 93062 periphery Staphylococcus aureus COL Staphylococcus aureus subsp. aureus COL 94122 periphery Shewanella sp. ANA3 Shewanella sp. ANA-3 99287 periphery Salmonella typhimurium Salmonella typhimurium LT2 99883 periphery Tetraodon nigroviridis Tetraodon nigroviridis 100226 core Streptomyces coelicolor Streptomyces coelicolor A3(2) 101510 core Rhodococcus sp. Rhodococcus sp. RHA1 103690 core Nostoc sp. Nostoc sp. PCC 7120 106370 core Frankia sp. CcI3 Frankia sp. CcI3 107806 core Buchnera aphidicola APS Buchnera aphidicola str. APS (Acyrthosiphon pisum) 110662 periphery Synechococcus sp. CC9605 Synechococcus sp. CC9605 114615 periphery Bradyrhizobium sp. ORS278 Bradyrhizobium sp. ORS278 115711 periphery Chlamydophila pneumoniae AR39 Chlamydophila pneumoniae AR39 115713 core Chlamydophila pneumoniae CWL029 Chlamydophila pneumoniae CWL029 119857 periphery Francisella tularensis holarctica Francisella tularensis subsp. holarctica 122586 core Neisseria meningitidis MC58 Neisseria meningitidis MC58 122587 periphery Neisseria meningitidis Z2491 Neisseria meningitidis Z2491 138119 core Desulfitobacterium hafniense Desulfitobacterium hafniense Y51 138677 periphery Chlamydophila pneumoniae J138 Chlamydophila pneumoniae J138 146891 periphery Prochlorococcus marinus AS9601 Prochlorococcus marinus str. AS9601 155864 periphery Escherichia coli EDL933 Escherichia coli O157:H7 EDL933 156889 core Magnetococcus sp. Magnetococcus sp. MC-1 158878 core Staphylococcus aureus Mu50 Staphylococcus aureus subsp. aureus Mu50 158879 periphery Staphylococcus aureus N315 Staphylococcus aureus subsp. aureus N315 159087 core Dechloromonas aromatica Dechloromonas aromatica RCB 160488 periphery Pseudomonas putida KT2440 Pseudomonas putida KT2440 160490 periphery Streptococcus pyogenes M1 Streptococcus pyogenes M1 GAS 160491 periphery Streptococcus pyogenes Manfredo Streptococcus pyogenes str. Manfredo 160492 core Xylella fastidiosa 9a5c Xylella fastidiosa 9a5c 163164 core Wolbachia sp. wMel Wolbachia endosymbiont of Drosophila melanogaster 164756 periphery Mycobacterium sp. MCS Mycobacterium sp. MCS 164757 periphery Mycobacterium sp. JLS Mycobacterium sp. JLS 167539 periphery Prochlorococcus marinus CCMP1375 Prochlorococcus marinus subsp. marinus str. CCMP1375 167542 periphery Prochlorococcus marinus 9515 Prochlorococcus marinus str. MIT 9515 167546 periphery Prochlorococcus marinus 9301 Prochlorococcus marinus str. MIT 9301 167555 periphery Prochlorococcus marinus NATL1A Prochlorococcus marinus str. NATL1A 167879 core Colwellia psychrerythraea Colwellia psychrerythraea 34H 169963 periphery Listeria monocytogenes EGDe Listeria monocytogenes EGD-e 170187 core Streptococcus pneumoniae TIGR4 Streptococcus pneumoniae TIGR4 171101 periphery Streptococcus pneumoniae R6 Streptococcus pneumoniae R6 176279 periphery Staphylococcus epidermidis RP62A Staphylococcus epidermidis RP62A 176280 periphery Staphylococcus epidermidis 12228 Staphylococcus epidermidis ATCC 12228 176299 core Agrobacterium tumefaciens Agrobacterium tumefaciens str. C58 177416 core Francisella tularensis S4 Francisella tularensis subsp. tularensis SCHU S4 177439 core Desulfotalea psychrophila Desulfotalea psychrophila LSv54 178306 core Pyrobaculum aerophilum Pyrobaculum aerophilum str. IM2 182082 periphery Chlamydophila pneumoniae TW183 Chlamydophila pneumoniae TW-183 183190 periphery Xylella fastidiosa Temecula1 Xylella fastidiosa Temecula1 184922 core Giardia lamblia Giardia lamblia ATCC 50803 186103 periphery Streptococcus pyogenes MGAS8232 Streptococcus pyogenes MGAS8232 186497 periphery Pyrococcus furiosus Pyrococcus furiosus DSM 3638 187272 core Alkalilimnicola ehrlichei Alkalilimnicola ehrlichei MLHE-1 187410 periphery Yersinia pestis KIM Yersinia pestis KIM 187420 core Methanothermobacter thermautotrophicus Methanothermobacter thermautotrophicus str. Delta H 188937 periphery Methanosarcina acetivorans C2A Methanosarcina acetivorans C2A 189518 core Leptospira interrogans Lai Leptospira interrogans serovar Lai str. 56601 189918 periphery Mycobacterium sp. KMS Mycobacterium sp. KMS 190192 core Methanopyrus kandleri AV19 Methanopyrus kandleri AV19 190304 core Fusobacterium nucleatum Fusobacterium nucleatum subsp. nucleatum ATCC 25586 190485 core Xanthomonas campestris 33913 Xanthomonas campestris pv. campestris str. ATCC 33913 190486 periphery Xanthomonas axonopodis Xanthomonas axonopodis pv. citri str. 306 190650 core Caulobacter crescentus Caulobacter crescentus CB15 192222 core Campylobacter jejuni 11168 Campylobacter jejuni subsp. jejuni NCTC 11168 192952 core Methanosarcina mazei Methanosarcina mazei Go1 193567 periphery Streptococcus pyogenes SSI1 Streptococcus pyogenes SSI-1 194439 core Chlorobium tepidum Chlorobium tepidum TLS 195099 periphery Campylobacter jejuni RM1221 Campylobacter jejuni RM1221 195102 periphery Clostridium perfringens 13 Clostridium perfringens str. 13 195103 periphery Clostridium perfringens 13124 Clostridium perfringens ATCC 13124 196162 core Nocardioides sp. Nocardioides sp. JS614 196164 core Corynebacterium efficiens Corynebacterium efficiens YS-314 196600 periphery Vibrio vulnificus YJ016 Vibrio vulnificus YJ016 196620 periphery Staphylococcus aureus MW2 Staphylococcus aureus subsp. aureus MW2 196627 periphery Corynebacterium glutamicum 13032 Corynebacterium glutamicum ATCC 13032 197221 core Thermosynechococcus elongatus Thermosynechococcus elongatus BP-1 198094 periphery Bacillus anthracis Ames Bacillus anthracis str. Ames 198214 core Shigella flexneri 301 Shigella flexneri 2a str. 301 198215 periphery Shigella flexneri 2457T Shigella flexneri 2a str. 2457T 198466 periphery Streptococcus pyogenes MGAS315 Streptococcus pyogenes MGAS315 198804 periphery Buchnera aphidicola Sg Buchnera aphidicola str. Sg (Schizaphis graminum) 199310 periphery Escherichia coli CFT073 Escherichia coli CFT073 203119 periphery Clostridium thermocellum Clostridium thermocellum ATCC 27405 203120 core Leuconostoc mesenteroides Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 203122 core Saccharophagus degradans Saccharophagus degradans 2-40 203123 core Oenococcus oeni Oenococcus oeni PSU-1 203124 core Trichodesmium erythraeum Trichodesmium erythraeum IMS101 203267 core Tropheryma whipplei Twist Tropheryma whipplei str. Twist 203907 core Blochmannia floridanus Candidatus Blochmannia floridanus 204669 core Acidobacterium sp. Acidobacteria bacterium Ellin345 204722 periphery Brucella suis Brucella suis 1330 204773 core Herminiimonas arsenicoxydans Herminiimonas arsenicoxydans 205914 periphery Haemophilus somnus Haemophilus somnus 129PT 205918 periphery Pseudomonas syringae B728a Pseudomonas syringae pv. syringae B728a 205920 periphery Ehrlichia chaffeensis Ehrlichia chaffeensis str. Arkansas 205921 periphery Streptococcus agalactiae A909 Streptococcus agalactiae A909 205922 periphery Pseudomonas fluorescens PfO1 Pseudomonas fluorescens PfO-1 206672 core Bifidobacterium longum Bifidobacterium longum NCC2705 207559 periphery Desulfovibrio desulfuricans Desulfovibrio desulfuricans G20 208435 periphery Streptococcus agalactiae 2603 Streptococcus agalactiae 2603V/R 208963 periphery Pseudomonas aeruginosa PA14 Pseudomonas aeruginosa UCBPP-PA14 208964 core Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa PAO1 209261 periphery Salmonella enterica Ty2 Salmonella enterica subsp. enterica serovar Typhi Ty2 210007 periphery Streptococcus mutans Streptococcus mutans UA159 211110 periphery Streptococcus agalactiae NEM316 Streptococcus agalactiae NEM316 211586 core Shewanella oneidensis Shewanella oneidensis MR-1 212042 periphery Anaplasma phagocytophilum Anaplasma phagocytophilum HZ 212717 periphery Clostridium tetani Clostridium tetani E88 214092 core Yersinia pestis CO92 Yersinia pestis CO92 216389 periphery Dehalococcoides sp. BAV1 Dehalococcoides sp. BAV1 216596 periphery Rhizobium leguminosarum Rhizobium leguminosarum bv. viciae 3841 216895 periphery Vibrio vulnificus CMCP6 Vibrio vulnificus CMCP6 218491 core Erwinia carotovora Erwinia carotovora subsp. atroseptica SCRI1043 218496 periphery Tropheryma whipplei TW08 Tropheryma whipplei TW08/27 218497 periphery Chlamydophila abortus Chlamydophila abortus S26/3 220341 core Salmonella enterica CT18 Salmonella enterica subsp. enterica serovar Typhi str. CT18 220664 periphery Pseudomonas fluorescens Pf5 Pseudomonas fluorescens Pf-5 220668 core Lactobacillus plantarum Lactobacillus plantarum WCFS1 221109 core Oceanobacillus iheyensis Oceanobacillus iheyensis HTE831 221988 core Mannheimia succiniciproducens Mannheimia succiniciproducens MBEL55E 222523 periphery Bacillus cereus 10987 Bacillus cereus ATCC 10987 222891 core Neorickettsia sennetsu Neorickettsia sennetsu str. Miyayama 223283 periphery Pseudomonas syringae DC3000 Pseudomonas syringae pv. tomato str. DC3000 223926 periphery Vibrio parahaemolyticus Vibrio parahaemolyticus RIMD 2210633 224308 core Bacillus subtilis Bacillus subtilis subsp. subtilis str. 168 224324 core Aquifex aeolicus Aquifex aeolicus VF5 224325 core Archaeoglobus fulgidus Archaeoglobus fulgidus DSM 4304 224326 core Borrelia burgdorferi Borrelia burgdorferi B31 224911 core Bradyrhizobium japonicum Bradyrhizobium japonicum USDA 110 224914 core Brucella melitensis 16M Brucella melitensis 16M 224915 periphery Buchnera aphidicola Bp Buchnera aphidicola str. Bp (Baizongia pistaciae) 226185 core Enterococcus faecalis Enterococcus faecalis V583 226186 core Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 226900 periphery Bacillus cereus 14579 Bacillus cereus ATCC 14579 227377 core Coxiella burnetii 493 Coxiella burnetii RSA 493 227882 periphery Streptomyces avermitilis Streptomyces avermitilis MA-4680 227941 periphery Chlamydophila caviae Chlamydophila caviae GPIC 228405 core Hyphomonas neptunium Hyphomonas neptunium ATCC 15444 228410 core Nitrosomonas europaea Nitrosomonas europaea ATCC 19718 228908 core Nanoarchaeum equitans Nanoarchaeum equitans Kin4-M 229193 periphery Yersinia pestis Microtus Yersinia pestis biovar Microtus str. 91001 232721 core Acidovorax sp. JS42 Acidovorax sp. JS42 233150 periphery Mycoplasma gallisepticum Mycoplasma gallisepticum R 233412 periphery Haemophilus ducreyi Haemophilus ducreyi 35000HP 233413 periphery Mycobacterium bovis AF2122 Mycobacterium bovis AF2122/97 234267 core Solibacter usitatus Solibacter usitatus Ellin6076 234826 core Anaplasma marginale Anaplasma marginale str. St. Maries 235279 periphery Helicobacter hepaticus Helicobacter hepaticus ATCC 51449 235909 core Geobacillus kaustophilus Geobacillus kaustophilus HTA426 240292 core Anabaena variabilis Anabaena variabilis ATCC 29413 242231 periphery Neisseria gonorrhoeae Neisseria gonorrhoeae FA 1090 242619 core Porphyromonas gingivalis Porphyromonas gingivalis W83 243090 core Rhodopirellula baltica Rhodopirellula baltica SH 1 243161 periphery Chlamydia muridarum Chlamydia muridarum Nigg 243164 core Dehalococcoides ethenogenes Dehalococcoides ethenogenes 195 243230 core Deinococcus radiodurans Deinococcus radiodurans R1 243231 core Geobacter sulfurreducens Geobacter sulfurreducens PCA 243232 core Methanocaldococcus jannaschii Methanocaldococcus jannaschii DSM 2661 243233 core Methylococcus capsulatus Methylococcus capsulatus str. Bath 243243 periphery Mycobacterium avium 104 Mycobacterium avium 104 243265 core Photorhabdus luminescens Photorhabdus luminescens subsp. laumondii TTO1 243273 core Mycoplasma genitalium Mycoplasma genitalium G37 243274 core Thermotoga maritima Thermotoga maritima MSB8 243275 periphery Treponema denticola Treponema denticola ATCC 35405 243276 core Treponema pallidum Treponema pallidum subsp. pallidum str. Nichols 243277 core Vibrio cholerae N16961 Vibrio cholerae O1 biovar eltor str. N16961 243365 core Chromobacterium violaceum Chromobacterium violaceum ATCC 12472 246194 core Carboxydothermus hydrogenoformans Carboxydothermus hydrogenoformans Z-2901 246195 core Dichelobacter nodosus Dichelobacter nodosus VCS1703A 246196 periphery Mycobacterium smegmatis Mycobacterium smegmatis str. MC2 155 246197 core Myxococcus xanthus Myxococcus xanthus DK 1622 246200 core Silicibacter pomeroyi Silicibacter pomeroyi DSS-3 247156 core Nocardia farcinica Nocardia farcinica IFM 10152 251221 core Gloeobacter violaceus Gloeobacter violaceus PCC 7421 254945 core Ehrlichia ruminantium Welgevonden Ehrlichia ruminantium str. Welgevonden 255470 periphery Dehalococcoides sp. CBDB1 Dehalococcoides sp. CBDB1 257309 periphery Corynebacterium diphtheriae Corynebacterium diphtheriae NCTC 13129 257310 core Bordetella bronchiseptica Bordetella bronchiseptica RB50 257311 periphery Bordetella parapertussis Bordetella parapertussis 12822 257313 periphery Bordetella pertussis Bordetella pertussis Tohama I 257314 periphery Lactobacillus johnsonii Lactobacillus johnsonii NCC 533 257363 periphery Rickettsia typhi Rickettsia typhi str. Wilmington 258594 core Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris CGA009 259536 core Psychrobacter arcticus Psychrobacter arcticus 273-4 259564 core Methanococcoides burtonii Methanococcoides burtonii DSM 6242 260799 periphery Bacillus anthracis Sterne Bacillus anthracis str. Sterne 261594 periphery Bacillus anthracis 0581 Bacillus anthracis str. 'Ames Ancestor' 262316 periphery Mycobacterium avium K10 Mycobacterium avium subsp. paratuberculosis K-10 262698 periphery Brucella abortus Brucella abortus biovar 1 str. 9-941 262719 periphery Mycoplasma hyopneumoniae J Mycoplasma hyopneumoniae J 262722 periphery Mycoplasma hyopneumoniae 7448 Mycoplasma hyopneumoniae 7448 262723 periphery Mycoplasma synoviae Mycoplasma synoviae 53 262724 core Thermus thermophilus HB27 Thermus thermophilus HB27 262768 core Phytoplasma asteris onion Onion yellows phytoplasma OY-M 263820 core Picrophilus torridus Picrophilus torridus DSM 9790 264199 periphery Streptococcus thermophilus LMG18311 Streptococcus thermophilus LMG 18311 264201 core Protochlamydia amoebophila Candidatus Protochlamydia amoebophila UWE25 264202 periphery Chlamydophila felis Chlamydophila felis Fe/C-56 264203 core Zymomonas mobilis Zymomonas mobilis subsp. mobilis ZM4 264462 core Bdellovibrio bacteriovorus Bdellovibrio bacteriovorus HD100 264730 periphery Pseudomonas syringae 1448A Pseudomonas syringae pv. phaseolicola 1448A 264732 core Moorella thermoacetica Moorella thermoacetica ATCC 39073 265072 core Methylobacillus flagellatus Methylobacillus flagellatus KT 265311 core Mesoplasma florum Mesoplasma florum L1 265669 periphery Listeria monocytogenes F2365 Listeria monocytogenes str. 4b F2365 266117 core Rubrobacter xylanophilus Rubrobacter xylanophilus DSM 9941 266264 periphery Ralstonia metallidurans Ralstonia metallidurans CH34 266779 periphery Mesorhizobium sp. BNC1 Mesorhizobium sp. BNC1 266834 core Sinorhizobium meliloti Sinorhizobium meliloti 1021 266835 core Mesorhizobium loti Mesorhizobium loti MAFF303099 266940 core Kineococcus radiotolerans Kineococcus radiotolerans SRS30216 267377 core Methanococcus maripaludis S2 Methanococcus maripaludis S2 267608 core Ralstonia solanacearum Ralstonia solanacearum GMI1000 267671 periphery Leptospira interrogans Copenhageni Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 267747 core Propionibacterium acnes Propionibacterium acnes KPA171202 267748 periphery Mycoplasma mobile Mycoplasma mobile 163K 269084 periphery Synechococcus elongatus PCC6301 Synechococcus elongatus PCC 6301 269482 periphery Burkholderia vietnamiensis Burkholderia vietnamiensis G4 269483 periphery Burkholderia sp. 383 Burkholderia sp. 383 269484 periphery Ehrlichia canis Ehrlichia canis str. Jake 269796 core Rhodospirillum rubrum Rhodospirillum rubrum ATCC 11170 269797 periphery Methanosarcina barkeri Methanosarcina barkeri str. Fusaro 269798 core Cytophaga hutchinsonii Cytophaga hutchinsonii ATCC 33406 269799 periphery Geobacter metallireducens Geobacter metallireducens GS-15 269800 core Thermobifida fusca Thermobifida fusca YX 271848 periphery Burkholderia thailandensis Burkholderia thailandensis E264 272557 core Aeropyrum pernix Aeropyrum pernix K1 272558 periphery Bacillus halodurans Bacillus halodurans C-125 272559 periphery Bacteroides fragilis 9343 Bacteroides fragilis NCTC 9343 272560 core Burkholderia pseudomallei K96243 Burkholderia pseudomallei K96243 272561 core Chlamydia trachomatis D Chlamydia trachomatis D/UW-3/CX 272562 core Clostridium acetobutylicum Clostridium acetobutylicum ATCC 824 272563 periphery Clostridium difficile Clostridium difficile 630 272569 core Haloarcula marismortui Haloarcula marismortui ATCC 43049 272620 core Klebsiella pneumoniae Klebsiella pneumoniae subsp. pneumoniae MGH 78578 272621 periphery Lactobacillus acidophilus Lactobacillus acidophilus NCFM 272622 periphery Lactococcus lactis SK11 Lactococcus lactis subsp. cremoris SK11 272623 core Lactococcus lactis 1403 Lactococcus lactis subsp. lactis Il1403 272624 periphery Legionella pneumophila Philadelphia Legionella pneumophila subsp. pneumophila str. Philadelphia 1 272626 core Listeria innocua Listeria innocua Clip11262 272631 periphery Mycobacterium leprae Mycobacterium leprae TN 272632 periphery Mycoplasma mycoides Mycoplasma mycoides subsp. mycoides SC str. PG1 272633 periphery Mycoplasma penetrans Mycoplasma penetrans HF-2 272634 core Mycoplasma pneumoniae Mycoplasma pneumoniae M129 272635 periphery Mycoplasma pulmonis Mycoplasma pulmonis UAB CTIP 272831 periphery Neisseria meningitidis FAM18 Neisseria meningitidis FAM18 272843 core Pasteurella multocida Pasteurella multocida subsp. multocida str. Pm70 272844 periphery Pyrococcus abyssi Pyrococcus abyssi GE5 272943 core Rhodobacter sphaeroides 241 Rhodobacter sphaeroides 2.4.1 272944 periphery Rickettsia conorii Rickettsia conorii str. Malish 7 272947 core Rickettsia prowazekii Rickettsia prowazekii str. Madrid E 273036 periphery Staphylococcus aureus RF122 Staphylococcus aureus RF122 273057 core Sulfolobus solfataricus Sulfolobus solfataricus P2 273063 periphery Sulfolobus tokodaii Sulfolobus tokodaii str. 7 273068 core Thermoanaerobacter tengcongensis Thermoanaerobacter tengcongensis MB4 273075 core Thermoplasma acidophilum Thermoplasma acidophilum DSM 1728 273116 periphery Thermoplasma volcanium Thermoplasma volcanium GSS1 273119 core Ureaplasma parvum Ureaplasma parvum serovar 3 str. ATCC 700970 273121 core Wolinella succinogenes Wolinella succinogenes DSM 1740 273123 periphery Yersinia pseudotuberculosis 32953 Yersinia pseudotuberculosis IP 32953 278197 core Pediococcus pentosaceus Pediococcus pentosaceus ATCC 25745 279010 periphery Bacillus licheniformis Bacillus licheniformis ATCC 14580 279238 core Novosphingobium aromaticivorans Novosphingobium aromaticivorans DSM 12444 279808 periphery Staphylococcus haemolyticus Staphylococcus haemolyticus JCSC1435 281090 core Leifsonia xyli Leifsonia xyli subsp. xyli str. CTCB07 281309 periphery Bacillus thuringiensis konkukian Bacillus thuringiensis serovar konkukian str. 97-27 281310 periphery Haemophilus influenzae 028NP Haemophilus influenzae 86-028NP 282458 periphery Staphylococcus aureus MRSA252 Staphylococcus aureus subsp. aureus MRSA252 282459 periphery Staphylococcus aureus MSSA476 Staphylococcus aureus subsp. aureus MSSA476 283165 periphery Bartonella quintana Bartonella quintana str. Toulouse 283166 core Bartonella henselae Bartonella henselae str. Houston-1 283942 core Idiomarina loihiensis Idiomarina loihiensis L2TR 286636 periphery Streptococcus pyogenes MGAS10394 Streptococcus pyogenes MGAS10394 288000 periphery Bradyrhizobium sp. BTAi1 Bradyrhizobium sp. BTAi1 288681 periphery Bacillus cereus E33L Bacillus cereus E33L 289380 periphery Clostridium perfringens SM101 Clostridium perfringens SM101 290317 periphery Chlorobium phaeobacteroides Chlorobium phaeobacteroides DSM 266 290318 core Prosthecochloris vibrioformis Prosthecochloris vibrioformis DSM 265 290338 core Citrobacter koseri Citrobacter koseri ATCC BAA-895 290339 core Enterobacter sakazakii Enterobacter sakazakii ATCC BAA-894 290340 core Arthrobacter aurescens Arthrobacter aurescens TC1 290397 core Anaeromyxobacter dehalogenans Anaeromyxobacter dehalogenans 2CP-C 290398 core Chromohalobacter salexigens Chromohalobacter salexigens DSM 3043 290399 periphery Arthrobacter sp. FB24 Arthrobacter sp. FB24 290400 core Jannaschia sp. Jannaschia sp. CCS1 290402 periphery Clostridium beijerinckii Clostridium beijerinckii NCIMB 8052 290434 periphery Borrelia garinii Borrelia garinii PBi 290633 core Gluconobacter oxydans Gluconobacter oxydans 621H 291272 periphery Blochmannia pennsylvanicus Candidatus Blochmannia pennsylvanicus str. BPEN 291331 periphery Xanthomonas oryzae 10331 Xanthomonas oryzae pv. oryzae KACC10331 292414 periphery Silicibacter sp. TM1040 Silicibacter sp. TM1040 292415 core Thiobacillus denitrificans Thiobacillus denitrificans ATCC 25259 292459 core Symbiobacterium thermophilum Symbiobacterium thermophilum IAM 14863 292805 periphery Wolbachia sp. Brugia Wolbachia endosymbiont strain TRS of Brugia malayi 293613 periphery Rickettsia canadensis Rickettsia canadensis str. McKiel 293614 periphery Rickettsia akari Rickettsia akari str. Hartford 293653 periphery Streptococcus pyogenes MGAS5005 Streptococcus pyogenes MGAS5005 293826 core Alkaliphilus metalliredigens Alkaliphilus metalliredigens QYMF 295319 periphery Salmonella enterica Paratyphi Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 295358 periphery Mycoplasma hyopneumoniae 232 Mycoplasma hyopneumoniae 232 295405 periphery Bacteroides fragilis YCH46 Bacteroides fragilis YCH46 296591 core Polaromonas sp. Polaromonas sp. JS666 297245 periphery Legionella pneumophila Lens Legionella pneumophila str. Lens 297246 core Legionella pneumophila Paris Legionella pneumophila str. Paris 298386 core Photobacterium profundum Photobacterium profundum SS9 299033 periphery Lactobacillus reuteri Lactobacillus reuteri F275 299768 periphery Streptococcus thermophilus CNRZ1066 Streptococcus thermophilus CNRZ1066 300267 periphery Shigella dysenteriae Shigella dysenteriae Sd197 300269 core Shigella sonnei Shigella sonnei Ss046 300852 periphery Thermus thermophilus HB8 Thermus thermophilus HB8 302409 periphery Ehrlichia ruminantium Gardel Ehrlichia ruminantium str. Gardel 306537 periphery Corynebacterium jeikeium Corynebacterium jeikeium K411 309807 core Salinibacter ruber Salinibacter ruber DSM 13855 312153 core Polynucleobacter sp. Polynucleobacter sp. QLW-P1DMWA-1 312309 periphery Vibrio fischeri Vibrio fischeri ES114 314225 core Erythrobacter litoralis Erythrobacter litoralis HTCC2594 314315 periphery Lactobacillus sakei Lactobacillus sakei subsp. sakei 23K 314565 periphery Xanthomonas campestris 8004 Xanthomonas campestris pv. campestris str. 8004 315277 periphery Chlamydia trachomatis A Chlamydia trachomatis A/HAR-13 315456 periphery Rickettsia felis Rickettsia felis URRWXCal2 315749 periphery Bacillus cereus cytotoxis Bacillus cereus subsp. cytotoxis NVH 391-98 315750 periphery Bacillus pumilus Bacillus pumilus SAFR-032 316055 periphery Rhodopseudomonas palustris BisA53 Rhodopseudomonas palustris BisA53 316056 periphery Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisB18 316057 periphery Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris BisB5 316058 periphery Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris HaA2 316273 periphery Xanthomonas campestris 8510 Xanthomonas campestris pv. vesicatoria str. 85-10 316278 periphery Synechococcus sp. RCC307 Synechococcus sp. RCC307 316279 periphery Synechococcus sp. CC9902 Synechococcus sp. CC9902 316407 periphery Escherichia coli W3110 Escherichia coli W3110 317025 core Thiomicrospira crunogena Thiomicrospira crunogena XCL-2 317655 core Sphingopyxis alaskensis Sphingopyxis alaskensis RB2256 318161 periphery Shewanella denitrificans Shewanella denitrificans OS217 318167 periphery Shewanella frigidimarina Shewanella frigidimarina NCIMB 400 318586 core Paracoccus denitrificans Paracoccus denitrificans PD1222 319224 periphery Shewanella putrefaciens Shewanella putrefaciens CN-32 319225 core Pelodictyon luteolum Pelodictyon luteolum DSM 273 319701 periphery Streptococcus pyogenes MGAS6180 Streptococcus pyogenes MGAS6180 319795 periphery Deinococcus geothermalis Deinococcus geothermalis DSM 11300 320372 periphery Burkholderia pseudomallei 1710b Burkholderia pseudomallei 1710b 320373 periphery Burkholderia pseudomallei 668 Burkholderia pseudomallei 668 321314 periphery Salmonella enterica Choleraesuis Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 321327 periphery Synechococcus sp. JA33A Synechococcus sp. JA-3-3Ab 321332 periphery Synechococcus sp. JA23B Synechococcus sp. JA-2-3B'a(2-13) 321956 periphery Lactobacillus delbrueckii BAA365 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 321967 periphery Lactobacillus casei Lactobacillus casei ATCC 334 322098 core Phytoplasma asteris Aster yellows witches'-broom phytoplasma AYWB 322159 periphery Streptococcus thermophilus LMD9 Streptococcus thermophilus LMD-9 323097 periphery Nitrobacter hamburgensis Nitrobacter hamburgensis X14 323098 core Nitrobacter winogradskyi Nitrobacter winogradskyi Nb-255 323259 core Methanospirillum hungatei Methanospirillum hungatei JF-1 323261 core Nitrosococcus oceani Nitrosococcus oceani ATCC 19707 323848 core Nitrosospira multiformis Nitrosospira multiformis ATCC 25196 323850 periphery Shewanella loihica Shewanella loihica PV-4 324831 periphery Lactobacillus gasseri Lactobacillus gasseri ATCC 33323 325240 periphery Shewanella baltica OS155 Shewanella baltica OS155 326297 periphery Shewanella amazonensis Shewanella amazonensis SB2B 326298 periphery Thiomicrospira denitrificans Thiomicrospira denitrificans ATCC 33889 326423 periphery Bacillus amyloliquefaciens Bacillus amyloliquefaciens FZB42 326424 periphery Frankia alni ACN14a Frankia alni ACN14a 326442 core Pseudoalteromonas haloplanktis Pseudoalteromonas haloplanktis TAC125 330779 periphery Sulfolobus acidocaldarius Sulfolobus acidocaldarius DSM 639 331111 periphery Escherichia coli E24377A Escherichia coli E24377A 331112 periphery Escherichia coli HS Escherichia coli HS 331271 periphery Burkholderia cenocepacia 1054 Burkholderia cenocepacia AU 1054 331272 periphery Burkholderia cenocepacia 2424 Burkholderia cenocepacia HI2424 335283 periphery Nitrosomonas eutropha Nitrosomonas eutropha C91 335284 periphery Psychrobacter cryohalolentis Psychrobacter cryohalolentis K5 335541 core Syntrophomonas wolfei Syntrophomonas wolfei subsp. wolfei str. Goettingen 335543 core Syntrophobacter fumaroxidans Syntrophobacter fumaroxidans MPOB 335992 core Pelagibacter ubique Candidatus Pelagibacter ubique HTCC1062 336407 periphery Rickettsia bellii RML Rickettsia bellii RML369-C 336982 periphery Mycobacterium tuberculosis F11 Mycobacterium tuberculosis F11 338187 periphery Vibrio harveyi Vibrio harveyi ATCC BAA-1116 338963 core Pelobacter carbinolicus Pelobacter carbinolicus DSM 2380 338966 periphery Pelobacter propionicus Pelobacter propionicus DSM 2379 338969 core Rhodoferax ferrireducens Rhodoferax ferrireducens T118 339670 periphery Burkholderia ambifaria Burkholderia ambifaria AMMD 339671 periphery Actinobacillus succinogenes Actinobacillus succinogenes 130Z 339860 core Methanosphaera stadtmanae Methanosphaera stadtmanae DSM 3091 340047 periphery Mycoplasma capricolum Mycoplasma capricolum subsp. capricolum ATCC 27343 340102 periphery Pyrobaculum arsenaticum Pyrobaculum arsenaticum DSM 13514 340177 periphery Chlorobium chlorochromatii Chlorobium chlorochromatii CaD3 340322 periphery Corynebacterium glutamicum R Corynebacterium glutamicum R 342108 core Magnetospirillum magneticum Magnetospirillum magneticum AMB-1 342109 periphery Xanthomonas oryzae 311018 Xanthomonas oryzae pv. oryzae MAFF 311018 342451 periphery Staphylococcus saprophyticus Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 342610 periphery Pseudoalteromonas atlantica Pseudoalteromonas atlantica T6c 343509 core Sodalis glossinidius Sodalis glossinidius str. 'morsitans' 345073 periphery Vibrio cholerae O395 Vibrio cholerae O395 347257 periphery Mycoplasma agalactiae Mycoplasma agalactiae PG2 347834 core Rhizobium etli Rhizobium etli CFN 42 348780 core Natronomonas pharaonis Natronomonas pharaonis DSM 2160 349101 periphery Rhodobacter sphaeroides 17029 Rhodobacter sphaeroides ATCC 17029 349102 periphery Rhodobacter sphaeroides 17025 Rhodobacter sphaeroides ATCC 17025 349106 periphery Psychrobacter sp. PRwf1 Psychrobacter sp. PRwf-1 349124 core Halorhodospira halophila Halorhodospira halophila SL1 349161 core Desulfotomaculum reducens Desulfotomaculum reducens MI-1 349163 core Acidiphilium cryptum Acidiphilium cryptum JF-5 349307 core Methanosaeta thermophila PT Methanosaeta thermophila PT 349521 core Hahella chejuensis Hahella chejuensis KCTC 2396 349747 periphery Yersinia pseudotuberculosis 31758 Yersinia pseudotuberculosis IP 31758 350054 periphery Mycobacterium gilvum Mycobacterium gilvum PYR-GCK 350058 periphery Mycobacterium vanbaalenii Mycobacterium vanbaalenii PYR-1 351160 core Candidatus methanoarchaeon RC1 uncultured methanogenic archaeon RC-I 351348 core Marinobacter aquaeolei Marinobacter aquaeolei VT8 351605 periphery Geobacter uraniumreducens Geobacter uraniumreducens Rf4 351607 core Acidothermus cellulolyticus Acidothermus cellulolyticus 11B 351627 core Caldicellulosiruptor saccharolyticus Caldicellulosiruptor saccharolyticus DSM 8903 351745 periphery Shewanella sp. W3181 Shewanella sp. W3-18-1 351746 periphery Pseudomonas putida F1 Pseudomonas putida F1 354242 periphery Campylobacter jejuni 81176 Campylobacter jejuni subsp. jejuni 81-176 355276 periphery Leptospira borgpetersenii L550 Leptospira borgpetersenii serovar Hardjo-bovis L550 355277 periphery Leptospira borgpetersenii JB197 Leptospira borgpetersenii serovar Hardjo-bovis JB197 357244 core Orientia tsutsugamushi Orientia tsutsugamushi Boryong 357348 periphery Burkholderia pseudomallei 1106a Burkholderia pseudomallei 1106a 357544 periphery Helicobacter pylori HPAG1 Helicobacter pylori HPAG1 357804 core Psychromonas ingrahamii Psychromonas ingrahamii 37 357808 periphery Roseiflexus sp. RS1 Roseiflexus sp. RS-1 359391 periphery Brucella melitensis 2308 Brucella melitensis biovar Abortus 2308 359786 periphery Staphylococcus aureus JH9 Staphylococcus aureus subsp. aureus JH9 359787 periphery Staphylococcus aureus JH1 Staphylococcus aureus subsp. aureus JH1 360095 periphery Bartonella bacilliformis Bartonella bacilliformis KC583 360102 periphery Yersinia pestis Antiqua Yersinia pestis Antiqua 360104 periphery Campylobacter concisus Campylobacter concisus 13826 360105 periphery Campylobacter curvus Campylobacter curvus 525.92 360106 periphery Campylobacter fetus Campylobacter fetus subsp. fetus 82-40 360107 periphery Campylobacter hominis Campylobacter hominis ATCC BAA-381 360109 periphery Campylobacter jejuni doylei Campylobacter jejuni subsp. doylei 269.97 362242 periphery Mycobacterium ulcerans Mycobacterium ulcerans Agy99 362663 periphery Escherichia coli 536 Escherichia coli 536 362948 periphery Lactobacillus salivarius Lactobacillus salivarius subsp. salivarius UCC118 362976 core Haloquadratum walsbyi Haloquadratum walsbyi DSM 16790 363253 core Lawsonia intracellularis Lawsonia intracellularis PHE/MN1-00 364106 periphery Escherichia coli UTI89 Escherichia coli UTI89 365044 periphery Polaromonas naphthalenivorans Polaromonas naphthalenivorans CJ2 366394 periphery Sinorhizobium medicae Sinorhizobium medicae WSM419 367737 core Arcobacter butzleri Arcobacter butzleri RM4018 367830 periphery Staphylococcus aureus USA300 Staphylococcus aureus subsp. aureus USA300 367928 periphery Bifidobacterium adolescentis Bifidobacterium adolescentis ATCC 15703 368407 core Methanoculleus marisnigri JR1 Methanoculleus marisnigri JR1 368408 core Thermofilum pendens Thermofilum pendens Hrk 5 369723 core Salinispora tropica Salinispora tropica CNB-440 370438 core Pelotomaculum thermopropionicum Pelotomaculum thermopropionicum SI 370551 periphery Streptococcus pyogenes MGAS9429 Streptococcus pyogenes MGAS9429 370552 periphery Streptococcus pyogenes MGAS10270 Streptococcus pyogenes MGAS10270 370553 periphery Streptococcus pyogenes MGAS2096 Streptococcus pyogenes MGAS2096 370554 periphery Streptococcus pyogenes MGAS10750 Streptococcus pyogenes MGAS10750 372461 periphery Buchnera aphidicola Cc Buchnera aphidicola str. Cc (Cinara cedri) 373153 periphery Streptococcus pneumoniae D39 Streptococcus pneumoniae D39 373384 periphery Shigella flexneri 8401 Shigella flexneri 5 str. 8401 374463 core Baumannia cicadellinicola Baumannia cicadellinicola str. Hc (Homalodisca coagulata) 374930 periphery Haemophilus influenzae PittEE Haemophilus influenzae PittEE 374931 periphery Haemophilus influenzae PittGG Haemophilus influenzae PittGG 375286 core Janthinobacterium sp. Janthinobacterium sp. Marseille 375451 core Roseobacter denitrificans Roseobacter denitrificans OCh 114 376686 core Flavobacterium johnsoniae Flavobacterium johnsoniae UW101 377628 periphery Yersinia pestis Nepal516 Yersinia pestis Nepal516 379731 periphery Pseudomonas stutzeri Pseudomonas stutzeri A1501 380703 core Aeromonas hydrophila Aeromonas hydrophila subsp. hydrophila ATCC 7966 381666 core Ralstonia eutropha H16 Ralstonia eutropha H16 381754 periphery Pseudomonas aeruginosa PA7 Pseudomonas aeruginosa PA7 381764 core Fervidobacterium nodosum Fervidobacterium nodosum Rt17-B1 382245 periphery Aeromonas salmonicida Aeromonas salmonicida subsp. salmonicida A449 382253 periphery Coxiella burnetii Dugway Coxiella burnetii Dugway 7E9-12 382638 periphery Helicobacter acinonychis Helicobacter acinonychis str. Sheeba 383372 core Roseiflexus castenholzii Roseiflexus castenholzii DSM 13941 384616 periphery Pyrobaculum islandicum Pyrobaculum islandicum DSM 4184 384676 periphery Pseudomonas entomophila Pseudomonas entomophila L48 386043 periphery Listeria welshimeri Listeria welshimeri serovar 6b str. SLCC5334 386415 periphery Clostridium novyi Clostridium novyi NT 386585 periphery Escherichia coli Sakai Escherichia coli O157:H7 str. Sakai 386656 periphery Yersinia pestis Pestoides Yersinia pestis Pestoides F 387092 core Nitratiruptor sp. Nitratiruptor sp. SB155-2 387093 core Sulfurovum sp. Sulfurovum sp. NBC37-1 387344 periphery Lactobacillus brevis Lactobacillus brevis ATCC 367 388919 periphery Streptococcus sanguinis Streptococcus sanguinis SK36 390236 periphery Borrelia afzelii Borrelia afzelii PKo 390333 periphery Lactobacillus delbrueckii 11842 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 390874 periphery Thermotoga petrophila Thermotoga petrophila RKU-1 391009 core Thermosipho melanesiensis Thermosipho melanesiensis BI429 391165 core Granulibacter bethesdensis Granulibacter bethesdensis CGDNIH1 391295 periphery Streptococcus suis 05ZYH33 Streptococcus suis 05ZYH33 391296 periphery Streptococcus suis 98HAH33 Streptococcus suis 98HAH33 391735 core Verminephrobacter eiseniae Verminephrobacter eiseniae EF01-2 391774 periphery Desulfovibrio vulgaris DP4 Desulfovibrio vulgaris subsp. vulgaris DP4 391896 periphery Rickettsia bellii OSU Rickettsia bellii OSU 85-389 392021 periphery Rickettsia rickettsii Rickettsia rickettsii str. 'Sheila Smith' 392499 core Sphingomonas wittichii Sphingomonas wittichii RW1 393011 periphery Francisella tularensis OSU18 Francisella tularensis subsp. holarctica OSU18 393115 periphery Francisella tularensis FSC198 Francisella tularensis subsp. tularensis FSC198 393305 periphery Yersinia enterocolitica Yersinia enterocolitica subsp. enterocolitica 8081 393595 core Alcanivorax borkumensis Alcanivorax borkumensis SK2 394221 core Maricaulis maris Maricaulis maris MCS10 397945 periphery Acidovorax avenae Acidovorax avenae subsp. citrulli AAC00-1 398579 periphery Shewanella pealeana Shewanella pealeana ATCC 700345 399549 core Metallosphaera sedula Metallosphaera sedula DSM 5348 399550 core Staphylothermus marinus Staphylothermus marinus F1 399739 periphery Pseudomonas mendocina Pseudomonas mendocina ymp 399741 core Serratia proteamaculans Serratia proteamaculans 568 399742 periphery Enterobacter sp. 638 Enterobacter sp. 638 400667 periphery Acinetobacter baumannii Acinetobacter baumannii ATCC 17978 400668 core Marinomonas sp. Marinomonas sp. MWYL1 400673 periphery Legionella pneumophila Corby Legionella pneumophila str. Corby 401614 periphery Francisella tularensis novicida Francisella tularensis subsp. novicida U112 402612 periphery Flavobacterium psychrophilum Flavobacterium psychrophilum JIP02/86 402880 periphery Methanococcus maripaludis C5 Methanococcus maripaludis C5 402881 core Parvibaculum lavamentivorans Parvibaculum lavamentivorans DS-1 402882 periphery Shewanella baltica OS185 Shewanella baltica OS185 404589 periphery Anaeromyxobacter sp. Fw109-5 Anaeromyxobacter sp. Fw109-5 405948 core Saccharopolyspora erythraea Saccharopolyspora erythraea NRRL 2338 405955 periphery Escherichia coli O1 Escherichia coli APEC O1 406327 periphery Methanococcus vannielii Methanococcus vannielii SB 407148 periphery Campylobacter jejuni 81116 Campylobacter jejuni subsp. jejuni 81116 410289 periphery Mycobacterium bovis 1173P2 Mycobacterium bovis BCG str. Pasteur 1173P2 410358 core Methanocorpusculum labreanum Methanocorpusculum labreanum Z 410359 periphery Pyrobaculum calidifontis Pyrobaculum calidifontis JCM 11548 411154 core Gramella forsetii Gramella forsetii KT0803 412694 periphery Bacillus thuringiensis Hakam Bacillus thuringiensis str. Al Hakam 412965 periphery Vesicomyosocius okutanii Candidatus Vesicomyosocius okutanii HA 413404 periphery Ruthia magnifica Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) 413999 periphery Clostridium botulinum 3502 Clostridium botulinum A str. ATCC 3502 415426 core Hyperthermus butylicus Hyperthermus butylicus DSM 5456 416269 core Actinobacillus pleuropneumoniae Actinobacillus pleuropneumoniae L20 416276 periphery Rickettsia massiliae Rickettsia massiliae MTU5 416870 periphery Lactococcus lactis MG1363 Lactococcus lactis subsp. cremoris MG1363 418127 periphery Staphylococcus aureus Mu3 Staphylococcus aureus subsp. aureus Mu3 418136 periphery Francisella tularensis WY96 Francisella tularensis subsp. tularensis WY96-3418 419665 periphery Methanococcus aeolicus Methanococcus aeolicus Nankai-3 419947 periphery Mycobacterium tuberculosis H37Ra Mycobacterium tuberculosis H37Ra 420246 periphery Geobacillus thermodenitrificans Geobacillus thermodenitrificans NG80-2 420247 core Methanobrevibacter smithii Methanobrevibacter smithii ATCC 35061 420662 core Methylibium petroleiphilum Methylibium petroleiphilum PM1 425104 periphery Shewanella sediminis Shewanella sediminis HAW-EB3 426368 periphery Methanococcus maripaludis C7 Methanococcus maripaludis C7 426430 periphery Staphylococcus aureus Newman Staphylococcus aureus subsp. aureus str. Newman 431943 periphery Clostridium kluyveri Clostridium kluyveri DSM 555 435590 periphery Bacteroides vulgatus ATCC 8482 Bacteroides vulgatus ATCC 8482 435591 core Parabacteroides distasonis Parabacteroides distasonis ATCC 8503 439375 core Ochrobactrum anthropi Ochrobactrum anthropi ATCC 49188 441770 periphery Clostridium botulinum 19397 Clostridium botulinum A str. ATCC 19397 441771 periphery Clostridium botulinum Hall Clostridium botulinum A str. Hall 441772 periphery Clostridium botulinum Langeland Clostridium botulinum F str. Langeland 443906 core Clavibacter michiganensis Clavibacter michiganensis subsp. michiganensis NCPPB 382 453591 core Ignicoccus hospitalis Ignicoccus hospitalis KIN4/I 456442 periphery Methanoregula boonei Candidatus Methanoregula boonei 6A8 458234 periphery Francisella tularensis FTA Francisella tularensis subsp. holarctica FTA 467705 periphery Streptococcus gordonii Streptococcus gordonii str. Challis substr. CH1